Browse Element(s) Details


Os.8018.1.S1_x_at

Description gb:AF221552.1
DB_XREF= gi:6942228
TID=Os.8018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8018 (NCBI UniGene Cluster)
UG_TITLE=Proline-rich protein RiP-15 mRNA, partial cds
DEF=Oryza sativa proline-rich protein RiP-15 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g139406/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g060001/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13900Os.9808.1.S1_at11/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13900Os.57426.1.S1_x_at3/115+7700949..7702460transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g13910OsAffx.26069.1.S1_x_at3/115+7712022..7715593hypothetical protein
LOC_Os05g13920Os.45212.1.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13920Os.31497.2.S1_x_at1/115+7716906..7721111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13930NANA5+7721459..7722821hypothetical protein
LOC_Os05g13940Os.57426.1.S1_s_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.3.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.2.S1_a_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.57426.1.S1_x_at11/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13940Os.8018.1.S1_x_at6/115+7725737..7727555retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8018.1.S1_x_at--215--4711NONE
GCGGCGACGGCCTTCATTGATGAAG
NONE
Os.8018.1.S1_x_at--1152--851NONE
ATGGCGGCCGCTTCATGAGCAAGCA
NONE
Os.8018.1.S1_x_at--978--3511Chr05:7727307..7727331 (25 bp)
CATGAGCAAGCAGGGTCGTGTGACA
LOC_Os05g13940
Os.8018.1.S1_x_at--230--7451NONE
GTGTGACATACGAGAAGCCGCCGGA
NONE
Os.8018.1.S1_x_at--847--8071Chr05:7727268..7727292 (25 bp)
GGAGCCGGAGCCGAAGCCAAAGCCA
LOC_Os05g13940
Os.8018.1.S1_x_at--773--1271Chr05:7727202..7727226 (25 bp)
AGAGCCGGAGCCAAAACCAGTACCT
LOC_Os05g13940
Os.8018.1.S1_x_at--483--2371NONE
AAACCAGTACCTAAGCCTGAGCCTA
NONE
Os.8018.1.S1_x_at--1000--4451Chr05:7727175..7727199 (25 bp)
GCCTGAGCCTAAACCGGAACCAAAG
LOC_Os05g13940
Os.8018.1.S1_x_at--816--312Chr10:3016419..3016438 (20 bp)
ATACCCAGAGCCAAAACCGGAGCCG
LOC_Os10g06000
Os.8018.1.S1_x_at--655--8911Chr05:7727070..7727094 (25 bp)
TGAGCCGGAGCCTAAACCTGAGCCT
LOC_Os05g13940
Os.8018.1.S1_x_at--185--8911NONE
TGAGCCTAAGCCCAAAAAGCCAAAA
NONE
Target Sequence 
GCGGCGACGGCCTTCATTGATGAAGCGGCGGCTGCTGGCCGGGGGCTCGGCCATGGCGGCCGCTTCATGAGCAAGCAGGG
TCGTGTGACATACGAGAAGCCGCCGGAGCCGGAGCCGAAGCCAAAGCCAAAGCCTCATCCTAAACCCACGCCAAAACCTA
AGCCCAAGCCAGAGCCGGAGCCAAAACCAGTACCTAAGCCTGAGCCTAAACCGGAACCAAAGCCAGAACCAAAACCTGAG
CCTAAGCCTGAACCTAAACCATACCCAGAGCCAAAACCGGAGCCGAAACCAGAGCCAAAACCGGAGCCAAAGCCAGAACC
CAAACCTGAGCCGGAGCCTAAACCTGAGCCTAAGCCCAAAAAGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8018.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis