Browse Element(s) Details


Os.802.1.S1_at

Description gb:AU082730
DB_XREF= gi:7134902
DB_XREF=AU082730
CLONE=R4069
TID=Os.802.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAM protein (P0436E04.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0143011/11NAM, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein
LOC_Os01g01450Os.12311.1.S1_x_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01450Os.12311.1.S1_at11/111+223699..226131stress responsive protein, putative, expressed
LOC_Os01g01460OsAffx.22946.1.S1_at10/111+229179..229490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01470NANA1+238445..239779No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.802.1.S1_at--832--451Chr01:213916..213940 (25 bp)
ATCTCTGCACCTTGGATTCACGGCG
LOC_Os01g01430
Os.802.1.S1_at--893--10491Chr01:213932..213956 (25 bp)
TTCACGGCGGTGAACGAGGGCAACA
LOC_Os01g01430
Os.802.1.S1_at--528--3691Chr01:213990..214014 (25 bp)
CTATTTCCATTTCCACTGCAGATAT
LOC_Os01g01430
Os.802.1.S1_at--289--1271Chr01:214009..214033 (25 bp)
AGATATGCTGCATGCGTCGTCGTCC
LOC_Os01g01430
Os.802.1.S1_at--645--2851Chr01:214046..214070 (25 bp)
AAGTCGACGCAAATCAACTTCTCCT
LOC_Os01g01430
Os.802.1.S1_at--732--10591Chr01:214064..214088 (25 bp)
TTCTCCTCCATATTTGAGCCGCAGA
LOC_Os01g01430
Os.802.1.S1_at--957--391Chr01:214107..214131 (25 bp)
ATCAGCTGATGTCTTCTCACAACGA
LOC_Os01g01430
Os.802.1.S1_at--443--2591Chr01:214127..214151 (25 bp)
AACGACGACACATCCATATGACCAA
LOC_Os01g01430
Os.802.1.S1_at--1131--6551Chr01:214186..214210 (25 bp)
GATTCAATTCGTTCAGTCATCATTT
LOC_Os01g01430
Os.802.1.S1_at--24--431Chr01:214204..214228 (25 bp)
ATCATTTCACTACCTACGTTCGTTA
LOC_Os01g01430
Os.802.1.S1_at--411--4011Chr01:214220..214244 (25 bp)
CGTTCGTTACGTCCAAGCTTGTTCA
LOC_Os01g01430
Target Sequence 
ATCTCTGCACCTTGGATTCACGGCGGTGAACGAGGGCAACANCAAGAGGCNCAAAACTATGGAGGAATATTATTCTATTT
CCATTTCCACTGCAGATATGCTGCATGCGTCGTCGTCCACGTCCAACAACAAGTCGACGCAAATCAACTTCTCCTCCATA
TTTGAGCCGCAGACGCCTGCAGCTGCGGGCCATCAGCTGATGTCTTCTCACAACGACGACACATCCATATGACCAACCTC
CCCCATCAACTATCTAAAGCTAGGTTAGCAGATTCAATTCGTTCAGTCATCATTTCACTACCTACGTTCGTTACGTCCAA
GCTTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis