Browse Element(s) Details


Os.8051.2.S1_x_at

Description gb:AK102883.1
DB_XREF= gi:32988092
TID=Os.8051.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033112J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112J01, full insert sequence.
FL= gb:AK059271.1 gb:AK102883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4782011/11Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed
LOC_Os11g47840Os.30200.1.S1_at11/1111+28295527..28299353rhomboid family protein, putative, expressed
LOC_Os11g47850NANA11+28302815..28303450transposon protein, putative, unclassified
LOC_Os11g47860OsAffx.19432.1.S1_at11/1111+28306549..28307016hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8051.2.S1_x_at--1023--591Chr11:28281534..28281558 (25 bp)
ATGCCTGTGGCTATGTGGACTGTAA
LOC_Os11g47820
Os.8051.2.S1_x_at--416--7551Chr11:28281495..28281519 (25 bp)
GTGGCGCATGCTTTGATCCGAACAA
LOC_Os11g47820
Os.8051.2.S1_x_at--913--8851Chr11:28281447..28281471 (25 bp)
TGATGAATGCCTTCTACCAGGCCAA
LOC_Os11g47820
Os.8051.2.S1_x_at--476--8231Chr11:28281417..28281441 (25 bp)
GGCACGACTACGATTGCGACTTCAA
LOC_Os11g47820
Os.8051.2.S1_x_at--964--2991Chr11:28281209..28281394 (25 bp)
AATGACCCTAGCTACGGGAGCTGCA
LOC_Os11g47820
Os.8051.2.S1_x_at--1160--5891Chr11:28281192..28281216 (25 bp)
GAGCTGCAAATACGTCTCCTGACGG
LOC_Os11g47820
Os.8051.2.S1_x_at--965--1911Chr11:28281171..28281195 (25 bp)
ACGGGACGCAGCAAGCCATGGCAGT
LOC_Os11g47820
Os.8051.2.S1_x_at--928--3711Chr11:28281119..28281143 (25 bp)
CTACCTCCAGGCTTAAGTCACGGAA
LOC_Os11g47820
Os.8051.2.S1_x_at--622--3131Chr11:28281057..28281081 (25 bp)
AATTTTTCTCTGCTCTTGTCTGACA
LOC_Os11g47820
Os.8051.2.S1_x_at--596--3411Chr11:28281034..28281058 (25 bp)
CAGCAGCCATGCTTCTTTCTTAGAA
LOC_Os11g47820
Os.8051.2.S1_x_at--742--7431Chr11:28280956..28280980 (25 bp)
GTGTATCCGTTATCAGTCAATTCTT
LOC_Os11g47820
Target Sequence 
ATGCCTGTGGCTATGTGGACTGTAAGCCGATACAAAGTGGTGGCGCATGCTTTGATCCGAACAACGTGCAGTCCCATGCT
GCATTTGTGATGAATGCCTTCTACCAGGCCAACGGGCGGCACGACTACGATTGCGACTTCAAGGGCNCCGGCGCNGGTCA
CCTCCAATGACCCTAGCTACGGGAGCTGCAAATACGTCTCCTGACGGGACGCAGCAAGCCATGGCAGTGCAGGTGCAGCG
GCACCAACCTCGAGTCTACCTCCAGGCTTAAGTCACGGAAGCGCTGGAGGGTTNCTAATACTGCCTGGCTTGCGCCTAAT
TTTTCTCTGCTCTTGTCTGACAGCAGCCATGCTTCTTTCTTAGAAGAGCTATACTATTCATTACTCTCGTAGCACNGGGG
AATGAACCTATTAAAATTGTGTATCCGTTATCAGTCAATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8051.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis