Browse Element(s) Details


Os.8076.1.S1_at

Description gb:AK069927.1
DB_XREF= gi:32979951
TID=Os.8076.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035H23, full insert sequence.
FL= gb:AK069927.1 gb:AK099256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3766010/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8076.1.S1_at--852--8191Chr12:23086435..23086455 (21 bp)
GGAAGTCCAGAAACCCGAGCATAGC
LOC_Os12g37660
Os.8076.1.S1_at--175--8611Chr12:23085694..23085718 (25 bp)
TGGTGCTGAGCGACATCCAGGCCAA
LOC_Os12g37660
Os.8076.1.S1_at--951--7951Chr12:23085659..23085683 (25 bp)
GGATCACACTTCGTCTACGGCGACT
LOC_Os12g37660
Os.8076.1.S1_at--555--751Chr12:23085608..23085632 (25 bp)
ATGTAATTCTGCCTGGGCTGGGCTA
LOC_Os12g37660
Os.8076.1.S1_at--294--8351Chr12:23085593..23085617 (25 bp)
GGCTGGGCTAGCTAACCACAACATG
LOC_Os12g37660
Os.8076.1.S1_at--642--8631Chr12:23085565..23085589 (25 bp)
TGTGTAGGGCCGTGATTTTTTCCAG
LOC_Os12g37660
Os.8076.1.S1_at--991--5631Chr12:23085529..23085553 (25 bp)
GACACCCTCTTGACTGGTTGCAGTT
LOC_Os12g37660
Os.8076.1.S1_at--43--3531Chr12:23085413..23085437 (25 bp)
CATGATGTTCTGAGGAGCGGCTGAT
LOC_Os12g37660
Os.8076.1.S1_at--716--1551Chr12:23085362..23085386 (25 bp)
AGCTTATGGCTTCTTTTGTATTCGG
LOC_Os12g37660
Os.8076.1.S1_at--1043--2772Chr02:30803983..30804153 (25 bp)
AAGAGCTCTCTTAAGGAGTGCCTTA
NONE
Os.8076.1.S1_at--786--1131Chr12:23085265..23085289 (25 bp)
AGTGCCTTAGTTCGGTTGTGCTTAA
NONE
Target Sequence 
GGAAGTCCAGAAACCCGAGCATAGCGGGATATACTACGGAGAGTACAAGTGCAGTGGGCCCGGGGCGCTGCCTAGCAAGA
GGATCGGGTGGTCGCTGGTGCTGAGCGACATCCAGGCCAAGCCCTTCACCGGATCACACTTCGTCTACGGCGACTCCTGG
ATCCTGCCGCCTCCCAAGAGCATGTAATTCTGCCTGGGCTGGGCTAGCTAACCACAACATGTGTTGTGTAGGGCCGTGAT
TTTTTCCAGCCCATTGGGCCGACACCCTCTTGACTGGTTGCAGTTAAGCAGAGGTTGGTTTTATTATTTGTTTGGAACTA
TGATTTGAAGATCATATCCAAGCATGCATGCACATACTTTGCATTATTGGGGGGAGCATGATGTTCTGAGGAGCGGCTGA
TGAGAATCTGGAATGAGTAGTTCTACAAGCTTATGGCTTCTTTTGTATTCGGATTCTGATAATCTGAGTGAGAATCTGTG
TTGTTTGAGAAGCTGAATATTTTGAATGAAGAGCTCTCTTAAGGAGTGCCTTAGTTCGGTTGTGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis