Browse Element(s) Details


Os.8080.1.S1_at

Description gb:AK122106.1
DB_XREF= gi:37991752
TID=Os.8080.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CSLA7 (P0011H09.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126E08, full insert sequence.
FL= gb:AK064833.1 gb:AK122106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4371011/11glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8080.1.S1_at--406--6191Chr07:26161430..26161454 (25 bp)
GAGGACAACACCTTGACTGTACGAA
LOC_Os07g43710
Os.8080.1.S1_at--1158--9451Chr07:26161474..26161498 (25 bp)
TCTGGGTATAAATTCTTCGGATGAC
LOC_Os07g43710
Os.8080.1.S1_at--912--271Chr07:26161523..26161547 (25 bp)
ATATGGCGTTGATCTGTGCACTAAC
LOC_Os07g43710
Os.8080.1.S1_at--257--7331Chr07:26161538..26161562 (25 bp)
GTGCACTAACACCTGTTTCAGTTGC
LOC_Os07g43710
Os.8080.1.S1_at--102--10531Chr07:26161554..26161578 (25 bp)
TTCAGTTGCTAGACTTCCAGGGAAA
LOC_Os07g43710
Os.8080.1.S1_at--697--5671Chr07:26161565..26161589 (25 bp)
GACTTCCAGGGAAACTTTCACAGAA
LOC_Os07g43710
Os.8080.1.S1_at--851--7391Chr07:26161618..26161642 (25 bp)
GTGATGTGTTATGTACTCTAGTTAA
LOC_Os07g43710
Os.8080.1.S1_at--1037--4311Chr07:26161683..26161707 (25 bp)
CCTTGAGCGCATGAACTCCTTTTTT
LOC_Os07g43710
Os.8080.1.S1_at--1156--7911Chr07:26161715..26161739 (25 bp)
GGATTACTTCCTTGGGTGAATGAAC
LOC_Os07g43710
Os.8080.1.S1_at--581--3131Chr07:26161742..26161766 (25 bp)
AATTTTCCAGCACAGTGTCCCTGTT
LOC_Os07g43710
Os.8080.1.S1_at--604--3871Chr07:26161762..26161786 (25 bp)
CTGTTCCGACTGTACACATGCAGAT
LOC_Os07g43710
Target Sequence 
GAGGACAACACCTTGACTGTACGAAATGTTGTTTGCAATTATTTTCTGGGTATAAATTCTTCGGATGACATTTCAGATCA
TGATCATAGATGCATATGGCGTTGATCTGTGCACTAACACCTGTTTCAGTTGCTAGACTTCCAGGGAAACTTTCACAGAA
TACTAGGATGTGTTGTAATCAAATATCAGTGATGTGTTATGTACTCTAGTTAACACGAAACACCAATTTGTTGATCTTTT
TCTTGGATTACTTCCTTGAGCGCATGAACTCCTTTTTTTTTTCTTGGATTACTTCCTTGGGTGAATGAACACAATTTTCC
AGCACAGTGTCCCTGTTCCGACTGTACACATGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis