Browse Element(s) Details


Os.8080.2.S1_x_at

Description gb:NM_193083.1
DB_XREF= gi:34913249
GEN=P0011H09.35
TID=Os.8080.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8080 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CSLA7 (P0011H09.35), mRNA.
PROD=putative CSLA7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4371011/11glycosyltransferase 5, putative, expressed
LOC_Os02g421341/11ARF GTPase-activating domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005634cellular_componentnucleus
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0003677molecular_functionDNA binding
GO:0008060molecular_functionARF GTPase activator activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8080.2.S1_x_at--1016--6491Chr07:26160684..26160708 (25 bp)
GATATATCGCTCCTCAAGAAGTTCT
LOC_Os07g43710
Os.8080.2.S1_x_at--139--9552Chr07:26160715..26160739 (25 bp)
TCTATAGCTTCTTTTTGGTGCGGAG
LOC_Os07g43710
Os.8080.2.S1_x_at--627--8611Chr07:26160730..26160754 (25 bp)
TGGTGCGGAGAGTTGTAGCCCCTAT
LOC_Os07g43710
Os.8080.2.S1_x_at--506--3691Chr07:26160751..26160775 (25 bp)
CTATGGTTGCCTGTGTTCTTTACAA
LOC_Os07g43710
Os.8080.2.S1_x_at--469--2091Chr07:26160775..26160799 (25 bp)
ACATCATAGTCCCTTTGTCGGTCAT
LOC_Os07g43710
Os.8080.2.S1_x_at--917--8691Chr07:26160790..26160814 (25 bp)
TGTCGGTCATGATCCCAGAGCTATT
LOC_Os07g43710
Os.8080.2.S1_x_at--624--2071Chr07:26160838..26160862 (25 bp)
ACATTCCTATGGCACTTCTGATTAT
LOC_Os07g43710
Os.8080.2.S1_x_at--691--5731Chr07:26161024..26161048 (25 bp)
GACTGTGCTTCGCATGAGAGCTGCA
LOC_Os07g43710
Os.8080.2.S1_x_at--1075--1591Chr07:26161042..26161066 (25 bp)
AGCTGCACTAACTGGCCTTATGGAA
LOC_Os07g43710
Os.8080.2.S1_x_at--473--10771Chr07:26161116..26161140 (25 bp)
TTGAGGACACTCAGGTTCCTTTGCT
LOC_Os07g43710
Os.8080.2.S1_x_at--1090--10311Chr07:26161294..26161318 (25 bp)
TTTCTCATCTTCTGTGCGTCATATA
LOC_Os07g43710
Target Sequence 
GATATATCGCTCCTCAAGAAGTTCTATATGCTCTATAGCTTCTTTTTGGTGCGGAGAGTTGTAGCCCCTATGGTTGCCTG
TGTTCTTTACAACATCATAGTCCCTTTGTCGGTCATGATCCCAGAGCTATTCATACCAATCTGGGGTGTCGCCTACATTC
CTATGGCACTTCTGATTATCACAACCATAAGAAATCCAAGAAATCTACACATAATGCCGTTTTGGATCTTATTTGAGAGT
GTGATGACTGTGCTTCGCATGAGAGCTGCACTAACTGGCCTTATGGAATTATCTGGGTTTAACAAGTGGACTGTGACGAA
GAAGATAGGGAGTAGTGTTGAGGACACTCAGGTTCCTTTGCTTCCAAAAACCCGGAAAAGGTTAAGAGACAGAATTAATC
TTCCCGAGATTGGATTTTCGGTGTTTCTCATCTTCTGTGCGTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8080.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis