Browse Element(s) Details


Os.8133.1.S1_at

Description gb:AK121301.1
DB_XREF= gi:37990924
TID=Os.8133.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110M10, full insert sequence.
FL= gb:AK121301.1 gb:AK100373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3273011/11alkaline/neutral invertase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32700Os.20902.1.A1_at1/112+19417381..19418082Autophagy-related protein 8 precursor, putative
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8133.1.S1_at--153--5211Chr02:19435694..19435718 (25 bp)
GAATTGCTATCGACAAATGGCCTGA
LOC_Os02g32730
Os.8133.1.S1_at--651--2031Chr02:19435721..19435745 (25 bp)
ACTATGACACCAAACGAGCACGCTT
LOC_Os02g32730
Os.8133.1.S1_at--97--2471Chr02:19435754..19435778 (25 bp)
AACAGTCTCGTCTTTACCAAACCTG
LOC_Os02g32730
Os.8133.1.S1_at--770--2371Chr02:19435772..19435796 (25 bp)
AAACCTGGTCTATTGCTGGGTACCT
LOC_Os02g32730
Os.8133.1.S1_at--342--8631Chr02:19435788..19435812 (25 bp)
TGGGTACCTTGTGGCCAAGCAACTG
LOC_Os02g32730
Os.8133.1.S1_at--1048--4711Chr02:19435812..19435836 (25 bp)
GCTGGACAAACCTGATGCTGCTAGA
LOC_Os02g32730
Os.8133.1.S1_at--764--2791Chr02:19435946..19435970 (25 bp)
AAGATCCATCACTTGGTTCTTTAAG
LOC_Os02g32730
Os.8133.1.S1_at--666--1291Chr02:19436036..19436060 (25 bp)
AGATGCCTGCTGTTGGATGCTGTTA
LOC_Os02g32730
Os.8133.1.S1_at--294--2351Chr02:19436087..19436111 (25 bp)
AAAGCACTTGCCTGGGCATTTCTCA
LOC_Os02g32730
Os.8133.1.S1_at--1127--171Chr02:19436130..19436154 (25 bp)
ATTTTTGTACACTAGACTTGCCTCT
LOC_Os02g32730
Os.8133.1.S1_at--690--5671Chr02:19436144..19436168 (25 bp)
GACTTGCCTCTTGTAGTTTACCATA
LOC_Os02g32730
Target Sequence 
GAATTGCTATCGACAAATGGCCTGAATACTATGACACCAAACGAGCACGCTTCATTGGNAAACAGTCTCGTCTTTACCAA
ACCTGGTCTATTGCTGGGTACCTTGTGGCCAAGCAACTGCTGGACAAACCTGATGCTGCTAGAATTCTTTCGAACGACGA
GGATNCAGAAATTCTTAATGCTTTGAGCACNAACAGGAAAAGAGGCAAGAAAGTGTTAAAGAAGACATTCATTGTATGAG
TTCTTGAAGCAAAAGATCCATCACTTGGTTCTTTAAGTTAGCATTTAAGTTATAGGAAATNTCTTCCTGTATATATACAC
GAAAGGATATGTTTGGACGGAGAGATGCCTGCTGTTGGATGCTGTTATTGTAGATGCATCTGGCTTTTGCAAGAAAGCAC
TTGCCTGGGCATTTCTCAANTGTATCCCTTTCATCAATTTTTGTACACTAGACTTGCCTCTTGTAGTTTACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis