Browse Element(s) Details


Os.8142.1.S1_a_at

Description gb:AK067314.1
DB_XREF= gi:32977332
TID=Os.8142.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.8142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102G21, full insert sequence.
FL= gb:AK067314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3622011/11Two-component response regulator-like PRR95, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein
LOC_Os09g36240Os.28421.1.S1_at11/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36240OsAffx.18064.1.S1_at6/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007623biological_processcircadian rhythm
GO:0009266biological_processresponse to temperature stimulus
GO:0009640biological_processphotomorphogenesis
GO:0010017biological_processred or far red light signaling pathway
GO:0010031biological_processcircumnutation
GO:0016310biological_processphosphorylation
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8142.1.S1_a_at--1032--2251Chr09:20885367..20885391 (25 bp)
AAATCCTGATGGTTTACGCCACCTG
LOC_Os09g36220
Os.8142.1.S1_a_at--355--2571Chr09:20885338..20885362 (25 bp)
AACGAGAGGCTGCACTGAACAAGTT
LOC_Os09g36220
Os.8142.1.S1_a_at--870--931Chr09:20885161..20885185 (25 bp)
AGGAAGCTACTAGCCGAGCAGCGAC
LOC_Os09g36220
Os.8142.1.S1_a_at--39--6771Chr09:20885131..20885155 (25 bp)
GTTAAGGGTCAGTTTGTTCGGCAAG
LOC_Os09g36220
Os.8142.1.S1_a_at--707--7631Chr09:20885092..20885116 (25 bp)
GGGAGCTAGGGCTGTCCAAACTTCA
LOC_Os09g36220
Os.8142.1.S1_a_at--644--6791Chr09:20885049..20885073 (25 bp)
GTTATCCTGGTGGTCAGTGTCAGAT
LOC_Os09g36220
Os.8142.1.S1_a_at--841--7351Chr09:20885012..20885036 (25 bp)
GTGAAAGTATGATTGCCCTGACCTA
LOC_Os09g36220
Os.8142.1.S1_a_at--1140--2511Chr09:20884946..20884970 (25 bp)
AACTTCGTGTGCTAGGTTAGGCCAT
LOC_Os09g36220
Os.8142.1.S1_a_at--1017--4331Chr09:20884925..20884949 (25 bp)
CCATGGACCTCGTACATTGTAGAGT
LOC_Os09g36220
Os.8142.1.S1_a_at--697--1191Chr09:20884895..20884919 (25 bp)
AGTAGGGATCATATTTTGCTTCAGA
LOC_Os09g36220
Os.8142.1.S1_a_at--840--351Chr09:20884865..20884889 (25 bp)
ATAAGCTGCGTTTATCATGTAGCAC
LOC_Os09g36220
Target Sequence 
AAATCCTGATGGTTTACGCCACCTGAGCCAACGAGAGGCTGCACTGAACAAGTTCCGGCTTAAGAGGAAAGACAGGTGCT
TTGAGAAGAAGGTGCGATACCAGAGCAGGAAGCTACTAGCCGAGCAGCGACCGCGGGTTAAGGGTCAGTTTGTTCGGCAA
GATCATGGTGTCCAAGGGAGCTAGGGCTGTCCAAACTTCAGGAGATTGCTGTGCCNCGGTTATCCTGGTGGTCAGTGTCA
GATTTTGTTTGAAGAGTGAAAGTATGATTGCCCTGACCTACAGTCAGCAGTGTATGGTGGTGTTGCATATATATACAGGC
TAACTTCGTGTGCTAGGTTAGGCCATGGACCTCGTACATTGTAGAGTTTGTCAGTAGGGATCATATTTTGCTTCAGATCT
AGATAAGCTGCGTTTATCATGTAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8142.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis