Browse Element(s) Details


Os.8143.1.S1_at

Description gb:AK059016.1
DB_XREF= gi:32969034
TID=Os.8143.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A10, full insert sequence.
FL= gb:AK067710.1 gb:AK059016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3202011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31980NANA7+19016957..19019884retrotransposon protein, putative, unclassified
LOC_Os07g31990NANA7+19025823..19028277transposon protein, putative, Mutator sub-class
LOC_Os07g32000OsAffx.19664.2.S1_at11/117+19032992..19034719hypothetical protein
LOC_Os07g32000OsAffx.19664.1.S1_at4/117+19032992..19034719hypothetical protein
LOC_Os07g32010Os.17181.1.S1_at11/117+19036155..19037919UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32070OsAffx.28706.1.S1_at11/117+19062966..19064012hypothetical protein
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8143.1.S1_at--135--4471Chr07:19045061..19045085 (25 bp)
GCCTGGAACGCAGCGGGCACCGGTT
LOC_Os07g32020
Os.8143.1.S1_at--717--8351Chr07:19045117..19045141 (25 bp)
GGCGGCAGCATGAATCCCACCGACG
LOC_Os07g32020
Os.8143.1.S1_at--373--8071Chr07:19045338..19045362 (25 bp)
GGAGCAGCACTTGAACGCGTTCACG
LOC_Os07g32020
Os.8143.1.S1_at--172--4331Chr07:19045391..19045415 (25 bp)
CCATGAAGGTGGACAGGAAACGGAA
LOC_Os07g32020
Os.8143.1.S1_at--317--5551Chr07:19045407..19045431 (25 bp)
GAAACGGAACAACTTCGTCGAGGCG
LOC_Os07g32020
Os.8143.1.S1_at--211--8171Chr07:19045412..19045436 (25 bp)
GGAACAACTTCGTCGAGGCGTCCGA
LOC_Os07g32020
Os.8143.1.S1_at--337--2451Chr07:19045414..19045438 (25 bp)
AACAACTTCGTCGAGGCGTCCGAGG
LOC_Os07g32020
Os.8143.1.S1_at--261--971Chr07:19045580..19045604 (25 bp)
AGGAGCTCTCCACGCAGACGGCTTA
LOC_Os07g32020
Os.8143.1.S1_at--897--3771Chr07:19045585..19045609 (25 bp)
CTCTCCACGCAGACGGCTTAAAATA
LOC_Os07g32020
Os.8143.1.S1_at--89--1911Chr07:19045597..19045621 (25 bp)
ACGGCTTAAAATACTACTCTCTCTG
LOC_Os07g32020
Os.8143.1.S1_at--495--2012Chr07:19045612..19045636 (25 bp)
ACTCTCTCTGTTCCGTTTCAGGTTA
LOC_Os07g32020
Target Sequence 
GCCTGGAACGCAGCGGGCACCGGTTCCTGTGGGTGCTGCGCGGCGCTCCGGCCGCCGGCGGCAGCATGAATCCCACCGAC
GCCGATCTCGACGAGCTTCTCCCGGAGGGTTTCCTGGAGAGGACGACGGGGAGAGCTCTCGTGTGGCCGACGTGGGCGCC
GCAGAAGGAGATCCTCGCGCACGCCGCCGTGGGCGGGTTCGTGACGCACGGCGGGTGGAACTCGACGCTGGAGAGCCTGT
GGTTCGGCGTGCCGATGGTGCCGTGGCCGCTCTACGCGGAGCAGCACTTGAACGCGTTCACGCTGGTGGCCGCCATGGGC
GTGGCCGTGGCCATGAAGGTGGACAGGAAACGGAACAACTTCGTCGAGGCGTCCGAGGTGGAGCGCGCGGTGAGNTCGCT
GATGGGTGGGTCGGAGGAAGGGAGGAAGGCAAGGGAGAAGGCGGCGGAGATGAAGGCCGTGTGCCGGAAGGCTGTGGAGG
AGGGTGGGTCGTCGGACATGGCGGTGCANAAGCTCTACGAGGAGCTCTCCACGCAGACGGCTTAAAATACTACTCTCTCT
GTTCCGTTTCAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis