Browse Element(s) Details


Os.8203.1.S1_at

Description gb:AK099480.1
DB_XREF= gi:32984689
TID=Os.8203.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBb0016M10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025G01, full insert sequence.
FL= gb:AK059665.1 gb:AK099480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0575011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05790Os.46488.1.S1_at11/1110+2905914..2907826expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8203.1.S1_at--512--9491Chr10:2882368..2882392 (25 bp)
TCTGCGACCCGTTCCACAAGAAGGA
LOC_Os10g05750
Os.8203.1.S1_at--912--3231Chr10:2882352..2882376 (25 bp)
CAAGAAGGACTTCTTCTTCCACTAC
LOC_Os10g05750
Os.8203.1.S1_at--268--1831Chr10:2882219..2882243 (25 bp)
ACGCCGGTGTACAAGCAGCCGCTGC
LOC_Os10g05750
Os.8203.1.S1_at--68--911Chr10:2882125..2882149 (25 bp)
AGGCTGACCCCGAGCTGTTCAAGAA
LOC_Os10g05750
Os.8203.1.S1_at--788--1451Chr10:2882083..2882107 (25 bp)
AGAAGAATCCATTCCTCAAGTTCCC
LOC_Os10g05750
Os.8203.1.S1_at--560--6091Chr10:2881966..2881990 (25 bp)
GAGTACTAGCTGGTTTAATTGCTTC
LOC_Os10g05750
Os.8203.1.S1_at--82--9751Chr10:2881951..2881975 (25 bp)
TAATTGCTTCGTTTCTTTGTGTGTT
LOC_Os10g05750
Os.8203.1.S1_at--16--5911Chr10:2881909..2881933 (25 bp)
GAGCTAGTTAATTACTGCCCTTCTA
LOC_Os10g05750
Os.8203.1.S1_at--1030--10471Chr10:2881898..2881922 (25 bp)
TTACTGCCCTTCTAGCGTTGTTGAA
LOC_Os10g05750
Os.8203.1.S1_at--78--6671Chr10:2881879..2881903 (25 bp)
GTTGAAGCTTGGTCTGTTGCCTGCC
LOC_Os10g05750
Os.8203.1.S1_at--1119--10691Chr10:2881863..2881887 (25 bp)
TTGCCTGCCTGCTAGCTTAACTATT
LOC_Os10g05750
Target Sequence 
TCTGCGACCCGTTCCACAAGAAGGACTTCTTCTTCCACTACAAGAACCCGTCGCCGCCAGCGCCGGCGGCGTACCACAAG
CCGCCGCCGTCGTACACGCACCCGGCGCCGCCGGTGTACTCCTACCCGACGCCGGCGTACTCTCACCCGACGCCGGTGTA
CAAGCAGCCGCTGCCGACGCCGTCGCCGCCGATCTACCACCCGCCGGCGGAGGAGAAGAAGGTGGCGATGCAGGACGACG
CGGAGGCTGACCCCGAGCTGTTCAAGAAGCTGCTGCCATTGATCAAGAAGAATCCATTCCTCAAGTTCCCCAAGCTCCCG
CCTGTGGAGGTGGAGGCAAAGCCATAGATGGTCGCCGNCTTCGCCGCGGCGCCATGATCGATCGATCGAAGCGAGGAAAC
ATGAGTACTAGCTGGTTTAATTGCTTCGTTTCTTTGTGTGTTTTTCACANCGGCTACTCGAGCTAGTTAATTACTGCCCT
TCTAGCGTTGTTGAAGCTTGGTCTGTTGCCTGCCTGCTAGCTTAACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis