Browse Element(s) Details


Os.8220.1.S1_at

Description gb:AK107966.1
DB_XREF= gi:32993175
TID=Os.8220.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D02, full insert sequence.
FL= gb:AK107966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3668010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36619Os.54149.1.S1_at11/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36619Os.47073.1.S1_at1/112+22104271..22111787Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8220.1.S1_at--736--6011Chr02:22135292..22135316 (25 bp)
GAGAGGAGTGTTCGTCCCTTCAAAC
LOC_Os02g36680
Os.8220.1.S1_at--573--3851Chr02:22135206..22135230 (25 bp)
CTGAGAACGAGCTGGCCGCGAAGAC
LOC_Os02g36680
Os.8220.1.S1_at--727--1711Chr02:22135163..22135187 (25 bp)
ACCAGCCGCGCCGAAGAAGTGATGC
LOC_Os02g36680
Os.8220.1.S1_at--354--1111Chr02:22135146..22135170 (25 bp)
AGTGATGCCCGCGAGATGGATACAT
LOC_Os02g36680
Os.8220.1.S1_at--548--8431Chr02:22135003..22135027 (25 bp)
GGCCTCTGAGCGTTACTATCTACTA
LOC_Os02g36680
Os.8220.1.S1_at--888--5811Chr02:22134919..22134943 (25 bp)
GACCCGGCAGAAACCATGCGTTTGT
LOC_Os02g36680
Os.8220.1.S1_at--919--7511Chr02:22134877..22134901 (25 bp)
GTGGACAACTCATATGCCGGTTGAT
LOC_Os02g36680
Os.8220.1.S1_at--733--6531Chr02:22134855..22134879 (25 bp)
GATTTACCTGTATGTACTCTGTGTG
LOC_Os02g36680
Os.8220.1.S1_at--890--6391Chr02:22134823..22134847 (25 bp)
GATCGATAGATATGCTCGCCTGCAG
LOC_Os02g36680
Os.8220.1.S1_at--245--3091Chr02:22134783..22134807 (25 bp)
AATAATTTGGTGTGTTCGCGTGTGT
LOC_Os02g36680
Os.8220.1.S1_at--490--8671Chr02:22134763..22134787 (25 bp)
TGTGTGATCTTGTTTGTTTCCGCTC
NONE
Target Sequence 
GAGAGGAGTGTTCGTCCCTTCAAACGAGTACGAGGCGGCAGGGGCANCTCGGGCTNGCCAAAAGGGCCAAGCAGACTGAC
ATTTCCGCTGAGAACGAGCTGGCCGCGAAGACCACCGGNCACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGC
GAGATGGATACATGGCGCGCGCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGG
CGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTAT
TAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGT
GTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAG
ATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTGTGATCTTGTTTGTTTCCGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis