Browse Element(s) Details


Os.8261.2.S1_at

Description gb:AK101688.1
DB_XREF= gi:32986897
TID=Os.8261.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.6 (P0518C01.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059E20, full insert sequence.
FL= gb:AK101688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7395010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8261.2.S1_at--1103--5591NONE
GAAATTATTGAGTTGCTCGAGCGAT
NONE
Os.8261.2.S1_at--357--5891Chr01:43164905..43164929 (25 bp)
GAGCGATGGATTTTCAGCAGAGGCA
LOC_Os01g73950
Os.8261.2.S1_at--775--7991Chr01:43164839..43164863 (25 bp)
GGATGGATAGATTCCCAGCTGGGTC
LOC_Os01g73950
Os.8261.2.S1_at--999--1611Chr01:43164823..43164847 (25 bp)
AGCTGGGTCAGTTCAAGCACTCCAT
LOC_Os01g73950
Os.8261.2.S1_at--311--6611Chr01:43164773..43164797 (25 bp)
GATTGGTAACAGAGAGCAGCGATAT
LOC_Os01g73950
Os.8261.2.S1_at--962--3791Chr01:43164707..43164731 (25 bp)
CTCGCACTCTGCCAACAATAATACA
LOC_Os01g73950
Os.8261.2.S1_at--1032--4951Chr01:43164668..43164692 (25 bp)
GCATAGGCATCTTCATGTACCGGCA
LOC_Os01g73950
Os.8261.2.S1_at--549--8751Chr01:43164653..43164677 (25 bp)
TGTACCGGCACATATCTTTCATGTA
LOC_Os01g73950
Os.8261.2.S1_at--730--3471Chr01:43164593..43164617 (25 bp)
CAGGCACCGACTTTTATTACAGGTT
LOC_Os01g73950
Os.8261.2.S1_at--514--10351Chr01:43164581..43164605 (25 bp)
TTTATTACAGGTTGCTGCCTGCCTT
LOC_Os01g73950
Os.8261.2.S1_at--668--10651Chr01:43164550..43164574 (25 bp)
TTCCCCACATCTCCTTTTGCAGTTT
LOC_Os01g73950
Target Sequence 
GAAATTATTGAGTTGCTCGAGCGATGGATTTTCAGCAGAGGCAGAGGGCAAAAACTGTGGCTGNATGTGATGGCAGCTTA
NATTGGATGGATAGATTCCCAGCTGGGTCAGTTCAAGCACTCCATGCTTGACGGAGNTTGGCAAGACAAAGATTGGTAAC
AGAGAGCAGCGATATGATGATTATATGCTCAAGATATTTGGTCTTTGAAGATGCTNCTCGCACTCTGCCAACAATAATAC
ATGCCGAATATTATCGCATAGGCATCTTCATGTACCGGCACATATCTTTCATGTACCAGCATCCCCATCAGNTTCGNCAA
CATTTCTTTNCAGGCACCGACTTTTATTACAGGTTGCTGCCTGCCTTCTTTTCTTCCCCACATCTCCTTTTGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8261.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis