Browse Element(s) Details


Os.8285.1.S1_at

Description gb:AK120278.1
DB_XREF= gi:37989901
TID=Os.8285.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA ligase (OSJNBb0049A16.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049F02, full insert sequence.
FL= gb:AK120278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3475011/11DNA ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8285.1.S1_at--535--6851Chr10:18224708..18224732 (25 bp)
GTTTGCTGACACAATGGACCCAGAT
LOC_Os10g34750
Os.8285.1.S1_at--787--5811Chr10:18224692..18224716 (25 bp)
GACCCAGATGTGTGGTTTGAGCCTT
LOC_Os10g34750
Os.8285.1.S1_at--265--10251Chr10:18224129..18224153 (25 bp)
TTTGGGAGGTGAAAGCTGCTGATTT
LOC_Os10g34750
Os.8285.1.S1_at--847--10251Chr10:18224107..18224131 (25 bp)
TTTGAGCATTAGTCCTGTGCATCGT
LOC_Os10g34750
Os.8285.1.S1_at--87--8691Chr10:18224092..18224116 (25 bp)
TGTGCATCGTGCTGCCAATGGTATA
LOC_Os10g34750
Os.8285.1.S1_at--652--10171Chr10:18223985..18224095 (25 bp)
TATAGTTGATCCGAACAAGGGCATC
LOC_Os10g34750
Os.8285.1.S1_at--1013--2871Chr10:18223969..18223992 (24 bp)
AAGGGCATCTCCCTAAGATTTCCTC
LOC_Os10g34750
Os.8285.1.S1_at--516--2811Chr10:18223955..18223979 (25 bp)
AAGATTTCCTCGCTTGTTACGTGTT
LOC_Os10g34750
Os.8285.1.S1_at--891--3791Chr10:18223947..18223971 (25 bp)
CTCGCTTGTTACGTGTTCGTGATGA
LOC_Os10g34750
Os.8285.1.S1_at--941--2111Chr10:18223911..18223934 (24 bp)
ACAGGCAACCACATCTGAGCAAGTT
LOC_Os10g34750
Os.8285.1.S1_at--753--6671Chr10:18223804..18223828 (25 bp)
GTTGCTGATATGTACCGTGCACAAA
LOC_Os10g34750
Target Sequence 
GTTTGCTGACACAATGGACCCAGATGTGTGGTTTGAGCCTTCAGAGGTTTGGGAGGTGAAAGCTGCTGATTTGAGCATTA
GTCCTGTGCATCGTGCTGCCAATGGTATAGTTGATCCGAACAAGGGCATCTCCCTAAGATTTCCTCGCTTGTTACGTGTT
CGTGATGATAAAAATCCAGAACAGGCAACCACATCTGAGCAAGTTGCTGATATGTACCGTGCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis