Browse Element(s) Details


Os.8295.1.S1_at

Description gb:AK066881.1
DB_XREF= gi:32976899
TID=Os.8295.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088J03, full insert sequence.
FL= gb:AK066881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0784011/11Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07890OsAffx.12774.1.S1_s_at11/113+3993626..3995589mitochondrial carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0004019molecular_functionadenylosuccinate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8295.1.S1_at--169--8351Chr03:3966700..3966724 (25 bp)
GGCTGGCTTGACATTGTTGCACTAA
LOC_Os03g07840
Os.8295.1.S1_at--1148--7671Chr03:3966655..3966679 (25 bp)
GGGTTTTCATCTCTTAATCTGACCA
LOC_Os03g07840
Os.8295.1.S1_at--69--7611Chr03:3966568..3966592 (25 bp)
GGGCAGAAGCTACAATCCTTCCCAG
LOC_Os03g07840
Os.8295.1.S1_at--818--2851Chr03:3966254..3966278 (25 bp)
AAGTGACATTTCGTCTGTCCGGAGT
LOC_Os03g07840
Os.8295.1.S1_at--496--8031Chr03:3966234..3966258 (25 bp)
GGAGTTACAGTGAACTTCCCCTAGC
LOC_Os03g07840
Os.8295.1.S1_at--1130--4771Chr03:3966211..3966235 (25 bp)
GCTGCCCAACGCTATGTCGAGAGGA
LOC_Os03g07840
Os.8295.1.S1_at--1081--2771Chr03:3966183..3966207 (25 bp)
AAGAGCTTGTTGGTGTTCCAGTCCA
LOC_Os03g07840
Os.8295.1.S1_at--861--6691Chr03:3966169..3966193 (25 bp)
GTTCCAGTCCACTACATTGGTGTTG
LOC_Os03g07840
Os.8295.1.S1_at--358--191Chr03:3966077..3966101 (25 bp)
ATTTCAGCCCTAACTTGGCCTTGAG
LOC_Os03g07840
Os.8295.1.S1_at--803--5791Chr03:3966051..3966075 (25 bp)
GACGCTCATCAGTATTTACCGCTAT
LOC_Os03g07840
Os.8295.1.S1_at--30--4171Chr03:3966033..3966057 (25 bp)
CCGCTATTTCGTTGGTACCTGTAAT
LOC_Os03g07840
Target Sequence 
GGCTGGCTTGACATTGTTGCACTAAAGTACTGCTGCGAGATAAATGGGTTTTCATCTCTTAATCTGACCAAACTTGATGT
TCTGTCTGGATTACCAGAAGTTAAGCTGGGGGTTTCTTATAACCAACCTGATGGGCAGAAGCTACAATCCTTCCCAGGGG
ATCTTGATACTCTGGAGCAAGTACAGGTCAAATATGAGGTGTTGCCTGGGTGGCAAAGTGACATTTCGTCTGTCCGGAGT
TACAGTGAACTTCCCCTAGCTGCCCAACGCTATGTCGAGAGGATAGAAGAGCTTGTTGGTGTTCCAGTCCACTACATTGG
TGTTGGACCTGGGAGGGATGCTCTAATATACAAGTAAAAGCAACTCCATTTGGTCATCAATTGAACCAAAATATTTCAGC
CCTAACTTGGCCTTGAGCGACGCTCATCAGTATTTACCGCTATTTCGTTGGTACCTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis