Browse Element(s) Details


Os.8381.1.S1_at

Description gb:AK104006.1
DB_XREF= gi:32989215
TID=Os.8381.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative VIP2 protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F10, full insert sequence.
FL= gb:AK104006.1 gb:AK111816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0627011/11VIP2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein
LOC_Os05g06260Os.16079.1.S1_at9/115+3159599..3166113Gamma-tubulin complex component 4 homolog, putative, expressed
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8381.1.S1_at--1120--9511Chr05:3168375..3168399 (25 bp)
TCTACCAGAGAACCCGGCATTTTGC
LOC_Os05g06270
Os.8381.1.S1_at--753--7891Chr05:3168338..3168362 (25 bp)
GGTTCATCTGGCCATAACTCGATGG
LOC_Os05g06270
Os.8381.1.S1_at--968--8151Chr05:3168296..3168320 (25 bp)
GGAAACCGATTCTATGCCTGGGAAC
LOC_Os05g06270
Os.8381.1.S1_at--895--8631Chr05:3168278..3168302 (25 bp)
TGGGAACGGGATCGCTTCGCACCAT
LOC_Os05g06270
Os.8381.1.S1_at--326--5511Chr05:3168125..3168149 (25 bp)
GAAAATCGATCACCCGAGGGCTCAT
LOC_Os05g06270
Os.8381.1.S1_at--492--6131Chr05:3168110..3168134 (25 bp)
GAGGGCTCATCGTATCGGCAAATGC
LOC_Os05g06270
Os.8381.1.S1_at--984--8231Chr05:3168094..3168118 (25 bp)
GGCAAATGCACACCCCAAGGATGTA
LOC_Os05g06270
Os.8381.1.S1_at--995--6751Chr05:3167991..3168015 (25 bp)
GTATGAAATTAAGCCCGGGTCGTGC
LOC_Os05g06270
Os.8381.1.S1_at--825--7791Chr05:3167974..3167998 (25 bp)
GGTCGTGCCGTAAGCCTCGAAGCAA
LOC_Os05g06270
Os.8381.1.S1_at--735--7871Chr05:3167901..3167925 (25 bp)
GGTTTATTGAGTTCCATCACGTACA
LOC_Os05g06270
Os.8381.1.S1_at--692--6511Chr05:3167858..3167882 (25 bp)
GATATTCGGAGTTTCACCTGTGATA
LOC_Os05g06270
Target Sequence 
TCTACCAGAGAACCCGGCATTTTGCCTTTTCCCACCAGGTTCATCTGGCCATAACTCGATGGAGACTGATGATGCAGGAG
GAAACCGATTCTATGCCTGGGAACGGGATCGCTTCGCACCATACCCACTAATGCCAGTGGACTGTGAGACAAACTGGTGG
AGTTCACAACAATCTCATGGTACATCAGAACCCGCGCCTGCTCCAAGGAGACTATTTGGGCAATGGATTGGTGTTGGAAG
ATCATCTCCGGAAAATCGATCACCCGAGGGCTCATCGTATCGGCAAATGCACACCCCAAGGATGTAGACCCTCATGAAGG
GAATTTAAGTTAATACTTAACATTTGAAATCTGAAGTTGCTTGTAAGAAGATGGAAAACCCATTGTATGAAATTAAGCCC
GGGTCGTGCCGTAAGCCTCGAAGCAAATCTGAGAAGAAGAAACAGAAAATAACCCGGGGTGGACATTTTGATTTGGTTTA
TTGAGTTCCATCACGTACATATTTGAAATCAAGTTGGGATATTCGGAGTTTCACCTGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis