Browse Element(s) Details


Os.8395.1.S1_at

Description gb:AK069514.1
DB_XREF= gi:32979538
TID=Os.8395.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020B07, full insert sequence.
FL= gb:AK105895.1 gb:AK109434.2 gb:AK060891.1 gb:AK069514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3765011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37650Os.8395.1.S1_at11/1112+23081951..23083004expressed protein
LOC_Os12g37660Os.8076.1.S1_at10/1112+23085267..23089159Pectinesterase family protein, expressed
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8395.1.S1_at--112--5651Chr12:23082500..23082524 (25 bp)
GACACCACCAAGGTCGATGAGGAGA
LOC_Os12g37650
Os.8395.1.S1_at--501--3231Chr12:23082643..23082667 (25 bp)
CAAGAACTGAAGAAGATCGATCGAT
LOC_Os12g37650
Os.8395.1.S1_at--725--511Chr12:23082666..23082690 (25 bp)
ATCGATATACACAGATCATCATACA
LOC_Os12g37650
Os.8395.1.S1_at--949--1271Chr12:23082678..23082702 (25 bp)
AGATCATCATACATCTCATCATCAT
LOC_Os12g37650
Os.8395.1.S1_at--225--3411Chr12:23082718..23082742 (25 bp)
CAGCAGCACGAGATCTCACTATCAT
LOC_Os12g37650
Os.8395.1.S1_at--912--5091Chr12:23082723..23082747 (25 bp)
GCACGAGATCTCACTATCATATGGA
LOC_Os12g37650
Os.8395.1.S1_at--847--831Chr12:23082743..23082767 (25 bp)
ATGGAGATTCAGATGAGCTAGTAGC
LOC_Os12g37650
Os.8395.1.S1_at--717--10491Chr12:23082790..23082814 (25 bp)
TTAATCGTTTTATTTGGTTCTGAAT
LOC_Os12g37650
Os.8395.1.S1_at--697--7891Chr12:23082805..23082829 (25 bp)
GGTTCTGAATAATCTGCATCTGCAT
LOC_Os12g37650
Os.8395.1.S1_at--656--3531Chr12:23082821..23082845 (25 bp)
CATCTGCATGCATGCACTGCTTTAA
LOC_Os12g37650
Os.8395.1.S1_at--564--4991Chr12:23082830..23082854 (25 bp)
GCATGCACTGCTTTAAATTAATTAT
LOC_Os12g37650
Target Sequence 
GACACCACCAAGGTCGATGAGGAGAAGAAGAAGGAGGAGGAGGTCGCCGGCGACGCCGCCGCCGCCGCCATTGACGAGAT
CGAGGGGAAGATGAAGGAGATGAACAGCAAGGAGGTGCAGGTGCAGGCCGAGGGAGTGGCAGCCAAGAACTGAAGAAGAT
CGATCGATCGATATACACAGATCATCATACATCTCATCATCATCATCAGCAGCAGNNNAAGCAGCAGCACGAGATCTCAC
TATCATATGGAGATTCAGATGAGCTAGTAGCTGAGATGATGAGTTATTATTAATTAATCGTTTTATTTGGTTCTGAATAA
TCTGCATCTGCATGCATGCACTGCTTTAAATTAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis