Browse Element(s) Details


Os.8499.1.S1_a_at

Description gb:AK071869.1
DB_XREF= gi:32981892
TID=Os.8499.1
CNT=8
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118K14, full insert sequence.
FL= gb:AK071869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4231011/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42280OsAffx.24685.1.S1_at11/112+25417824..25420552UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g42290Os.4948.1.S1_x_at11/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290OsAffx.24686.1.S1_at10/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42290Os.4948.2.S1_at1/112+25425421..25427911ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os02g42300Os.54078.1.S1_at11/112+25429184..25433567expressed protein
LOC_Os02g42300Os.54078.1.S2_at11/112+25429184..25433567expressed protein
LOC_Os02g42310Os.8499.1.S1_a_at11/112+25437006..25444238Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g42314Os.7368.1.S1_at11/112+25444418..25448205Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g42320Os.10566.1.S1_at11/112+25448359..25452739Proteasome subunit alpha type 2, putative, expressed
LOC_Os02g42330Os.17898.1.S1_at11/112+25453616..25456858Nitrilase 4, putative, expressed
LOC_Os02g42340OsAffx.12453.2.S1_x_at11/112+25457845..25458289hypothetical protein
LOC_Os02g42350Os.4158.1.S1_at11/112+25459865..25463715Nitrilase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8499.1.S1_a_at--214--1911Chr02:25443367..25443391 (25 bp)
ACGTGACCAATATCGGCTACAACTG
LOC_Os02g42310
Os.8499.1.S1_a_at--396--2571Chr02:25443387..25443505 (25 bp)
AACTGGACGCACTGCAGCGACGTGA
LOC_Os02g42310
Os.8499.1.S1_a_at--157--7371Chr02:25443701..25443725 (25 bp)
GTGACACCGATGGAAGGATCCCCGT
LOC_Os02g42310
Os.8499.1.S1_a_at--242--2911Chr02:25443714..25443738 (25 bp)
AAGGATCCCCGTGACGTCGACGAGG
LOC_Os02g42310
Os.8499.1.S1_a_at--811--2211Chr02:25443749..25443773 (25 bp)
ACAAGCTTGGGCTGAAGACGGTGCA
LOC_Os02g42310
Os.8499.1.S1_a_at--863--7491Chr02:25443786..25443806 (21 bp)
GTGGTACGACCATCAGCAGGTTGGA
LOC_Os02g42310
Os.8499.1.S1_a_at--714--8531Chr02:25443890..25443914 (25 bp)
TGGACGATCCTCTACGAGGGCCTGA
LOC_Os02g42310
Os.8499.1.S1_a_at--563--1071Chr02:25443906..25443930 (25 bp)
AGGGCCTGACGTTCGTGACGATCCG
LOC_Os02g42310
Os.8499.1.S1_a_at--300--4371Chr02:25444089..25444113 (25 bp)
CCACTAGGTTGTTTTCCAGCGATAC
LOC_Os02g42310
Os.8499.1.S1_a_at--888--9531Chr02:25444132..25444156 (25 bp)
TCTTTTCTTTGGTCCAAGACTCCAA
LOC_Os02g42310
Os.8499.1.S1_a_at--214--1411Chr02:25444148..25444172 (25 bp)
AGACTCCAAGTCATGTAACACAGTG
LOC_Os02g42310
Target Sequence 
ACGTGACCAATATCGGCTACAACTGGACGCACTGCAGCGACGTGATCGGCAAGTGGAGAGATGCTCCCTTCTCGACTCTC
CCCATCATCCGTAAGCTCGTCGCCGGCGGCATCAGGGTCTGGGTTTTCAGCGGTGACACCGATGGAAGGATCCCCGTGAC
GTCGACGAGGCTCACCCTGAACAAGCTTGGGCTGAAGACGGTGCAGGAGTGGACGCCGTGGTACGACCATCAGCAGGTTG
GAGGATGGACGATCCTCTACGAGGGCCTGACGTTCGTGACGATCCGCGGCGCCGGGCACGAGGTTCCCCTGCACGCGCCG
AGGCAGGCGCTCAGCCTCTTCAGCCACTTCTTGGCTGACAAGAAGATGCCTCCGACGGCGTTCCCCTAGTCGCTCGCATG
CAGTCTGCCTTNTTCAACGATGGCGAGGAACGGGCGTCGTGCGCCCACTAGGTTGTTTTCCAGCGATACCAACTGATCAG
GAAATTTTCTTTTCTTTGGTCCAAGACTCCAAGTCATGTAACACAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8499.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis