Browse Element(s) Details


Os.8504.1.S1_at

Description gb:AK099877.1
DB_XREF= gi:32985086
TID=Os.8504.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111H21, full insert sequence.
FL= gb:AK099877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4242010/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42380Os.9405.1.S1_at11/114+24857706..2485994040S ribosomal protein S11, putative, expressed
LOC_Os04g42399OsAffx.19542.3.S1_x_at3/114+24863702..24870238retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8504.1.S1_at--87--9631Chr04:24887983..24888007 (25 bp)
TCAGGCTTACCTTCTACGTTTGTGC
LOC_Os04g42420
Os.8504.1.S1_at--1082--3531Chr04:24888008..24888032 (25 bp)
CATCGTTTGTTGCTGTGGAACCCTA
LOC_Os04g42420
Os.8504.1.S1_at--172--6351Chr04:24888074..24888098 (25 bp)
GATGCTCTATGCAAGCGGATCGTTC
LOC_Os04g42420
Os.8504.1.S1_at--1144--6371Chr04:24888091..24888115 (25 bp)
GATCGTTCAGACATCCTCGGAGTCA
LOC_Os04g42420
Os.8504.1.S1_at--673--8251Chr04:24888130..24888154 (25 bp)
GGCACGCGCATGAACACAGACTATT
LOC_Os04g42420
Os.8504.1.S1_at--604--6611Chr04:24888185..24888209 (25 bp)
GTTGGCTTTCTTATCACTTCATATC
LOC_Os04g42420
Os.8504.1.S1_at--1155--231Chr04:24888205..24888229 (25 bp)
ATATCCCAGTGCTGTATTGTCCTAC
LOC_Os04g42420
Os.8504.1.S1_at--1026--10011Chr04:24888316..24888340 (25 bp)
TAGCAGTTACCAGCATACAGCCGGC
LOC_Os04g42420
Os.8504.1.S1_at--510--531Chr04:24888435..24888459 (25 bp)
ATCCCACTGACGCTGTTAATACCAT
LOC_Os04g42420
Os.8504.1.S1_at--147--3011Chr04:24888466..24888490 (25 bp)
AATGAGCCTGGTTATGTGTCTTCTT
LOC_Os04g42420
Os.8504.1.S1_at--272--6931NONE
GTATGTGTCGTGGTTTTCTATGGTC
NONE
Target Sequence 
TCAGGCTTACCTTCTACGTTTGTGCCATCGTTTGTTGCTGTGGAACCCTAGTGAGTGTGGTTTTCATAGCGAGGATAAAG
CCAGTTTATCAGATGCTCTATGCAAGCGGATCGTTCAGACATCCTCGGAGTCAACAACTCCANTGATGGCACGCGCATGA
ACACAGACTATTTTGGAGAGAATTATCAGCTCGGTGTGTATAGTTGGCTTTCTTATCACTTCATATCCCAGTGCTGTATT
GTCCTACTGTTGCTTGGTNCGTCCCNGTTGGATCGGAGAGTTATTTTGATTTCATCTGTACCTGTTCTGTAAAGCTTGTG
ATCAGTAGCAGACTAGCAGTTACCAGCATACAGCCGGCTGTCGAAGGNATGAAACTTGGGGGCGCGTATACATGGTGGGG
CNGTTCTTGTGCTTGTACATCAAGTTTGAGAATGTTGTACAATATCTTCTTCATCCCACTGACGCTGTTAATACCATGAG
TGCAATGAGCCTGGTTATGTGTCTTCTTNTTNNTTTTTTCCCATGGAAACTGATTATGTGTATGTGTCGTGGTTTTCTAT
GGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis