Browse Element(s) Details


Os.8506.1.S1_at

Description gb:AU225674
DB_XREF= gi:24208647
DB_XREF=AU225674
CLONE=KP3-0657
TID=Os.8506.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434C04.13 (P0434C04.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66400NANA1+38885986..38886518hypothetical protein
LOC_Os01g66410OsAffx.21808.1.S1_at7/111+38887410..38888773hypothetical protein
LOC_Os01g66410OsAffx.26951.1.S1_at1/111+38887410..38888773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8506.1.S1_at--1054--2531Chr01:38866611..38866635 (25 bp)
AACTGACAAATGTTGGGCCCGAGCA
LOC_Os01g66350
Os.8506.1.S1_at--1081--7551Chr01:38866625..38866649 (25 bp)
GGGCCCGAGCACCAAGTATGAACCA
LOC_Os01g66350
Os.8506.1.S1_at--873--6911Chr01:38866640..38866664 (25 bp)
GTATGAACCAGTCATCCTGTCATGC
LOC_Os01g66350
Os.8506.1.S1_at--271--8731Chr01:38866657..38866681 (25 bp)
TGTCATGCCATGAAAACCCGTTTTG
LOC_Os01g66350
Os.8506.1.S1_at--668--6011Chr01:38866709..38866733 (25 bp)
GAGAGAGCAATGCACCTGGCAATCT
LOC_Os01g66350
Os.8506.1.S1_at--532--8511Chr01:38866725..38866749 (25 bp)
TGGCAATCTCATCAGCAGGTGGAAT
LOC_Os01g66350
Os.8506.1.S1_at--670--7671Chr01:38866830..38866854 (25 bp)
GGGATTCCAGATTTCCAGCCGTTAG
LOC_Os01g66350
Os.8506.1.S1_at--222--3391Chr01:38866845..38866869 (25 bp)
CAGCCGTTAGCTTGCACATATCAGA
LOC_Os01g66350
Os.8506.1.S1_at--960--4511Chr01:38866917..38866941 (25 bp)
GCCCTACTGTAACCGGTTTTATGCG
LOC_Os01g66350
Os.8506.1.S1_at--28--10211Chr01:38866977..38867001 (25 bp)
TATTTATGCGGATCTGGCGGTCTTT
LOC_Os01g66350
Os.8506.1.S1_at--530--7151Chr01:38866996..38867020 (25 bp)
GTCTTTGAGATGTTTCCCTTTCTTT
LOC_Os01g66350
Target Sequence 
AACTGACAAATGTTGGGCCCGAGCACCAAGTATGAACCAGTCATCCTGTCATGCCATGAAAACCCGTTTTGGTTGGCACC
AAAGCTTACCAAAACCATGAGAGAGCAATGCACCTGGCAATCTCATCAGCAGGTGGAATACCNCAAGTGCAGAATAAAAT
TATGCACCAGAGCAGGTACGCAGATTAAGAAATCTGGACAGGACCCAAAGGGCAGCAAGGGGATTCCAGATTTCCAGCCG
TTAGCTTGCACATATCAGAGGCACAAATGTTTATGTTTGCTGCTGTGTTGTTCGCTTGGCTTAGCCGCCCTACTGTAACC
GGTTTTATGCGTTAGGGTGCAGAGTTTGTCAGTCTTTGAAGCTGTTTATTTATGCGGATCTGGCGGTCTTTGAGATGTTT
CCCTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis