Browse Element(s) Details


Os.8512.1.S1_at

Description gb:AK121514.1
DB_XREF= gi:37991137
TID=Os.8512.1
CNT=47
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025D16, full insert sequence.
FL= gb:AK121514.1 gb:AK062157.1 gb:AK064885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5038011/11protein phosphatase 2C homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50340Os.275.1.S1_at11/116+30469084..30473475Leucine Rich Repeat family protein, expressed
LOC_Os06g50350Os.46909.1.S1_at11/116+30478368..30479800expressed protein
LOC_Os06g50360Os.14409.1.S1_at11/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50360Os.7395.1.S1_s_at1/116+30479740..30484252pseudouridine synthase family protein, putative, expressed
LOC_Os06g50370Os.21040.1.S1_at11/116+30491807..30495151RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380Os.8512.1.S1_at11/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380Os.4654.1.S1_at1/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed
LOC_Os06g50410NANA6+30520810..30522036hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8512.1.S1_at--636--10431Chr06:30496050..30496074 (25 bp)
TTATGCATCTCAAATGTGACCCTGA
LOC_Os06g50380
Os.8512.1.S1_at--275--7491Chr06:30496018..30496042 (25 bp)
GTGGAGGCAACACACCTGACTGAAG
LOC_Os06g50380
Os.8512.1.S1_at--308--8971Chr06:30495998..30496022 (25 bp)
TGAAGAAGGTTTTCTTCCCCTGTGG
LOC_Os06g50380
Os.8512.1.S1_at--990--7031Chr06:30495969..30495993 (25 bp)
GTAAAAGCCGGTCATTTCGGCCAAG
LOC_Os06g50380
Os.8512.1.S1_at--213--10311Chr06:30495955..30495979 (25 bp)
TTTCGGCCAAGATCATTCCCTCAAT
LOC_Os06g50380
Os.8512.1.S1_at--1052--1351Chr06:30495913..30495937 (25 bp)
AGAGACACAGAAGCTCTTCTCCAGC
LOC_Os06g50380
Os.8512.1.S1_at--1096--3371Chr06:30495892..30495916 (25 bp)
CAGCTCTTTAATCCCAGCATCATAG
LOC_Os06g50380
Os.8512.1.S1_at--571--5231Chr06:30495838..30495862 (25 bp)
GAATAGCTAGCTGTTCAATTGTGTT
LOC_Os06g50380
Os.8512.1.S1_at--466--2351Chr06:30495793..30495817 (25 bp)
AAAGCTCAATCTTTCCAGCCGAAAA
LOC_Os06g50380
Os.8512.1.S1_at--1097--5451Chr06:30495534..30495558 (25 bp)
GAACTGAACCAGATCTCATCCGCTG
LOC_Os06g50380
Os.8512.1.S1_at--605--4731Chr06:30495513..30495537 (25 bp)
GCTGTGCCTCTTTAACTTGTGCAGT
LOC_Os06g50380
Target Sequence 
TTATGCATCTCAAATGTGACCCTGAATGCATGGTGGAGGCAACACACCTGACTGAAGAAGGTTTTCTTCCCCTGTGGTAA
AGTAAAAGCCGGTCATTTCGGCCAAGATCATTCCCTCAATGATGTAAAAAAAAATGGAGAGACACAGAAGCTCTTCTCCA
GCTCTTTAATCCCAGCATCATAGTAATGTATGTTTCAAGATCGACTTAAAAAGAATAGCTAGCTGTTCAATTGTGTTGTG
CTGCTGATGCTCCATGGAAAGCTCAATCTTTCCAGCCGAAAAAGCAAAAGTCTTGTTCCGCCGCAGGAATTNTTAACACC
AGTGCATATGAAATAATAAGCCAAAAAAGGAGTAACTTAATTAGCTGATGTTGTGGACCTTATGTATACTACTACTATAT
TTTTGACTTGTACATGCACTCTTATTTATTGACCACCGTGTAAATTGTTGCTTTCCCCTTGGGGAAGATTCACTTTGGAT
ACAGCAAGAACTCTGCCAANNNNCAACAAGGGTACCTGAACTGAACCAGATCTCATCCGCTGTGCCTCTTTAACTTGTGC
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis