Browse Element(s) Details


Os.8542.1.S1_at

Description gb:AK071387.1
DB_XREF= gi:32981410
TID=Os.8542.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091J19, full insert sequence.
FL= gb:AK059971.1 gb:AK071387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3759011/11prefoldin subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed
LOC_Os12g37640Os.10856.1.S1_at11/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed
LOC_Os12g37640Os.6323.2.S1_a_at1/1112+23072600..23077976metallopeptidase family M24 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0016272cellular_componentprefoldin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8542.1.S1_at--476--5251Chr12:23050316..23050340 (25 bp)
GAATCTACTCCCGTGCGAAAATCGA
LOC_Os12g37590
Os.8542.1.S1_at--550--6191Chr12:23050339..23050363 (25 bp)
GAGGACACCGATTCTGTGTGCCTAT
LOC_Os12g37590
Os.8542.1.S1_at--420--3011Chr12:23050380..23050404 (25 bp)
AATGCTGGAGTACTCCTGCGACGAG
LOC_Os12g37590
Os.8542.1.S1_at--1094--6211Chr12:23050483..23050506 (24 bp)
GAGGCCAACGCCCTCTTGAAAAAGA
LOC_Os12g37590
Os.8542.1.S1_at--173--10031Chr12:23050531..23050555 (25 bp)
TAGAAGTCCTTGTTGCTGATCTCCA
LOC_Os12g37590
Os.8542.1.S1_at--1145--8831Chr12:23050547..23050571 (25 bp)
TGATCTCCAGTTCTTGCGGGACCAA
LOC_Os12g37590
Os.8542.1.S1_at--507--6451Chr12:23050577..23050686 (25 bp)
GATCACTCAGGTTACAATTGCTCGG
LOC_Os12g37590
Os.8542.1.S1_at--488--2231Chr12:23050675..23050699 (25 bp)
ACAATTGCTCGGGTGTTCAACTGGG
LOC_Os12g37590
Os.8542.1.S1_at--271--10511Chr12:23050690..23050714 (25 bp)
TTCAACTGGGACGTGCACCAACGGA
LOC_Os12g37590
Os.8542.1.S1_at--55--2551Chr12:23050897..23050921 (25 bp)
AACTCTGTTTGCCTTGCAAGTAGAA
LOC_Os12g37590
Os.8542.1.S1_at--510--6011Chr12:23050994..23051018 (25 bp)
GAGAGAAACCTTTGCAATGCGTGTC
LOC_Os12g37590
Target Sequence 
GAATCTACTCCCGTGCGAAAATCGAGGACACCGATTCTGTGTGCCTATGGTTGGGTGCAAATGTAATGCTGGAGTACTCC
TGCGACGAGGCCAACGCCCTCTTGAAAAAGAATCTGGAAAACGCCAAGGCCAGTTTAGAAGTCCTTGTTGCTGATCTCCA
GTTCTTGCGGGACCAACAAACGATCACTCAGGTTACAATTGCTCGGGTGTTCAACTGGGACGTGCACCAACGGAGAAGCA
AGCAAGCTATCAAAGAAACCTGATCATCATACCCGCAGATTCTACCAGCCAAAATGAGATCGCGACATTTTTGTACTTCT
TGCCACCTCTGGCAGTCTAGGCCATCGTAGCATGTGCCCTCTGTTGGCGCCTTGCCGTGTAACAGTGTATCAGGTTTTAT
GGTGTTGGATTGTTGGAACTCTGTTTGCCTTGCAAGTAGAAATTGGTGTTTGTTTTCACTTCGGTTCGCGTGATGGAACA
TATTTTGAGGAGTAAAAATCTTAGCGGTTTTCAGAGAGAAACCTTTGCAATGCGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis