Browse Element(s) Details


Os.8561.1.S1_at

Description gb:BX900063
DB_XREF= gi:40490650
DB_XREF=BX900063
CLONE=p889h12p3
TID=Os.8561.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8561 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50922 (A.thaliana) T50922 bZIP protein HY5 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1086011/11TGACG-motif binding factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8561.1.S1_at--1151--9517Chr12:16140653..16140673 (21 bp)
TCTAACGGTGTAAATTCATCTGATA
NONE
Os.8561.1.S1_at--972--111Chr02:5760658..5760682 (25 bp)
ATTCATCTGATATTTCTCCCAATTA
LOC_Os02g10860
Os.8561.1.S1_at--608--10511Chr02:5760657..5760681 (25 bp)
TTCATCTGATATTTCTCCCAATTAT
LOC_Os02g10860
Os.8561.1.S1_at--533--3551Chr02:5760655..5760679 (25 bp)
CATCTGATATTTCTCCCAATTATTC
LOC_Os02g10860
Os.8561.1.S1_at--647--9471Chr02:5760653..5760677 (25 bp)
TCTGATATTTCTCCCAATTATTCTG
LOC_Os02g10860
Os.8561.1.S1_at--877--6511Chr02:5760650..5760674 (25 bp)
GATATTTCTCCCAATTATTCTGCAG
LOC_Os02g10860
Os.8561.1.S1_at--610--232Chr03:25792117..25792171 (25 bp)
ATATTTCTCCCAATTATTCTGCAGT
NONE
Os.8561.1.S1_at--337--10212Chr03:25792116..25792170 (25 bp)
TATTTCTCCCAATTATTCTGCAGTA
NONE
Os.8561.1.S1_at--824--194Chr07:14547450..14547469 (20 bp)
ATTTCTCCCAATTATTCTGCAGTAT
NONE
Os.8561.1.S1_at--939--10312Chr07:18462725..18462749 (25 bp)
TTTCTCCCAATTATTCTGCAGTATA
NONE
Os.8561.1.S1_at--55--9513Chr07:18462723..18462747 (25 bp)
TCTCCCAATTATTCTGCAGTATAAA
NONE
Target Sequence 
TCTAACGGTGTAAATTCATCTGATATTTCTCCCAATTATTCTGCAGTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis