Browse Element(s) Details


Os.8715.1.S1_at

Description gb:AK058935.1
DB_XREF= gi:32968953
TID=Os.8715.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E12, full insert sequence.
FL= gb:AK058935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5807011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8715.1.S1_at--1154--3411Chr02:35541239..35541263 (25 bp)
CAGAAAGGGCCTTGCTGTCAAACCA
LOC_Os02g58070
Os.8715.1.S1_at--726--6351Chr02:35541273..35541297 (25 bp)
GATGCGCTTCTTTTTTGGAGCATGA
LOC_Os02g58070
Os.8715.1.S1_at--1100--571Chr02:35541304..35541328 (25 bp)
ATGCCACTCTAGACCCTTTAAGTTT
LOC_Os02g58070
Os.8715.1.S1_at--911--6311Chr02:35541572..35541596 (25 bp)
GATGCATGTCCGTGAGTACAAAGCT
LOC_Os02g58070
Os.8715.1.S1_at--1121--7591Chr02:35542027..35542051 (25 bp)
GGGCACTTTCCAGGATGGCAGTTAT
LOC_Os02g58070
Os.8715.1.S1_at--466--6911Chr02:35542052..35542076 (25 bp)
GTAGGCTTTAGAGATCCACACCGGT
LOC_Os02g58070
Os.8715.1.S1_at--894--9191Chr02:35542066..35542090 (25 bp)
TCCACACCGGTGGTATTCTTTGCTC
LOC_Os02g58070
Os.8715.1.S1_at--820--9791Chr02:35542127..35542151 (25 bp)
TTTACTTGTCCATACCGTGTTTTTG
LOC_Os02g58070
Os.8715.1.S1_at--717--1311Chr02:35542153..35542177 (25 bp)
AGATGGTCTTGTTGAACCTGGCGCC
LOC_Os02g58070
Os.8715.1.S1_at--938--6631Chr02:35542325..35542349 (25 bp)
GTTGTCATTACTATAGAGCTCTCTC
LOC_Os02g58070
Os.8715.1.S1_at--886--10031Chr02:35542338..35542362 (25 bp)
TAGAGCTCTCTCCTATACATGAGGG
LOC_Os02g58070
Target Sequence 
CAGAAAGGGCCTTGCTGTCAAACCAAAGATGGGAGATGCGCTTCTTTTTTGGAGCATGAAACCAGATGCCACTCTAGACC
CTTTAAGTTTGCATGGGGGTTGTCCTGTCATCAAAGGAAACAAATGGTCATCAACCAAGTGGATGCATGTCCGTGAGTAC
AAAGCTTGAGCTTTCTGAAGTCGTGATTNCCAAAGATGGACCCTATATAAAGCATTGACTGGGGCACTTTCCAGGATGGC
AGTTATGTAGGCTTTAGAGATCCACACCGGTGGTATTCTTTGCTCTCTGAGAATATATAGTAGAGGCACTAAGCAAGGGG
GTTTACTTGTCCATACCGTGTTTTTGGAGATGGTCTTGTTGAACCTGGCGCCTTTTCTTCTTTATTTTTTCTGGCAGACT
ACAGAGGAATGAATGGTCCATTGTTGGGGACATAGGGTGNGGCGNTTGATTTAGTTNGTTTNGNGGNGTATTGCTATCTG
CTAANGTTAGNAGCTTAATTATGTACACTGTTGAGCTAAGTTGTCATTACTATAGAGCTCTCTCCTATACATGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis