Browse Element(s) Details


Os.8813.1.S1_s_at

Description gb:AK068444.1
DB_XREF= gi:32978462
TID=Os.8813.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154O05, full insert sequence.
FL= gb:AK068444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0564011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8813.1.S1_s_at--1062--9011Chr08:3007735..3007759 (25 bp)
TGCACTGTCGTCGAAACTCCAAAAA
LOC_Os08g05640
Os.8813.1.S1_s_at--583--3831Chr08:3007731..3007755 (25 bp)
CTGTCGTCGAAACTCCAAAAAGGAT
LOC_Os08g05640
Os.8813.1.S1_s_at--352--7171Chr08:3007729..3007753 (25 bp)
GTCGTCGAAACTCCAAAAAGGATAT
LOC_Os08g05640
Os.8813.1.S1_s_at--35--2251Chr08:3007566..3007590 (25 bp)
AAATTATGCATACTCCATTACCCTG
LOC_Os08g05640
Os.8813.1.S1_s_at--679--151Chr08:3007564..3007588 (25 bp)
ATTATGCATACTCCATTACCCTGTA
LOC_Os08g05640
Os.8813.1.S1_s_at--1123--10071Chr08:3007562..3007586 (25 bp)
TATGCATACTCCATTACCCTGTACA
LOC_Os08g05640
Os.8813.1.S1_s_at--569--9051Chr08:3007560..3007584 (25 bp)
TGCATACTCCATTACCCTGTACATA
LOC_Os08g05640
Os.8813.1.S1_s_at--942--3551Chr08:3007558..3007582 (25 bp)
CATACTCCATTACCCTGTACATATT
LOC_Os08g05640
Os.8813.1.S1_s_at--846--1791Chr08:3007555..3007579 (25 bp)
ACTCCATTACCCTGTACATATTACA
LOC_Os08g05640
Os.8813.1.S1_s_at--186--1811Chr08:3007547..3007571 (25 bp)
ACCCTGTACATATTACATTCAAATG
LOC_Os08g05640
Os.8813.1.S1_s_at--1128--9031Chr08:3007524..3007548 (25 bp)
TGCAGAAATTGTTATGTGTGTCCCA
LOC_Os08g05640
Target Sequence 
TGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGTTAATATATTAGTCCACCATTGTGTTGCAATTCG
TTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACAT
CTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8813.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis