Browse Element(s) Details


Os.8816.1.S1_at

Description gb:AK066386.1
DB_XREF= gi:32976404
TID=Os.8816.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066F17, full insert sequence.
FL= gb:AK066386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4078411/11CER1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8816.1.S1_at--274--2271Chr02:24712720..24712744 (25 bp)
AAATCATGGTCAGCTGCCATTCGGC
LOC_Os02g40784
Os.8816.1.S1_at--944--71Chr02:24712691..24712715 (25 bp)
ATTCCTTCCTCTCACTAAAGCTTGA
LOC_Os02g40784
Os.8816.1.S1_at--673--10751Chr02:24712670..24712694 (25 bp)
TTGACACCTCTGGAAGCATGGATGG
LOC_Os02g40784
Os.8816.1.S1_at--118--9091Chr02:24712623..24712647 (25 bp)
TGCTATGATTTCCAGCAACGGCATA
LOC_Os02g40784
Os.8816.1.S1_at--862--7031Chr02:24712349..24712373 (25 bp)
GTAAAACCTGACTGATCGCACGGTC
LOC_Os02g40784
Os.8816.1.S1_at--217--3351Chr02:24712331..24712355 (25 bp)
CACGGTCAGTGCTCTTGAGACGAGA
LOC_Os02g40784
Os.8816.1.S1_at--546--2351Chr02:24712291..24712315 (25 bp)
AAAGCTAAGCTTACTCGCTGGCTCG
LOC_Os02g40784
Os.8816.1.S1_at--382--8491Chr02:24712273..24712297 (25 bp)
TGGCTCGCTGCTACTATCGTTTTAG
LOC_Os02g40784
Os.8816.1.S1_at--470--9971Chr02:24712251..24712275 (25 bp)
TAGCCTTCCCTTAAAGTTTGATTCG
LOC_Os02g40784
Os.8816.1.S1_at--205--7051Chr02:24712221..24712245 (25 bp)
GTAAAATTCGCCCATGACGCTCTGC
LOC_Os02g40784
Os.8816.1.S1_at--290--691Chr02:24712208..24712232 (25 bp)
ATGACGCTCTGCACAAAATCTTTGA
LOC_Os02g40784
Target Sequence 
AAATCATGGTCAGCTGCCATTCGGCATGGATTCCTTCCTCTCACTAAAGCTTGACACCTCTGGAAGCATGGATGGNGTAT
TCCATGCTAGTAGATGATGCTATGATTTCCAGCAACGGCATAATCCATTCATTATCTAGCTTGGGAACCAGATGGATTAT
TCACTTATTATCTTACTATGTTTGTAATACTGAGCTTGGGTACTGATAAGTCATGAGGAGGCACAGTGCNAACGAACTTA
ATTCCAATAGCTCAGTATTTTATAATCTATAGTCTATGTCAGTTCTGTAACATTACGTTTATCTCTTATTTGAATCTTGT
GGGGGAATAATTAAAATAATAGGCAATGTTTTCTTGTTTAGACTTCGCAAAGTAAAACCTGACTGATCGCACGGTCAGTG
CTCTTGAGACGAGACAAACAAGACCAGGTAAAGCTAAGCTTACTCGCTGGCTCGCTGCTACTATCGTTTTAGCCTTCCCT
TAAAGTTTGATTCGACACTGTAAAATTCGCCCATGACGCTCTGCACAAAATCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis