Browse Element(s) Details


Os.8824.1.S1_at

Description gb:AK069730.1
DB_XREF= gi:32979754
TID=Os.8824.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026G14, full insert sequence.
FL= gb:AK104661.1 gb:AK061117.1 gb:AK069730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5990011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein
LOC_Os01g59890Os.25241.1.S1_at10/111+34963004..34966495expressed protein
LOC_Os01g59900Os.8824.1.S1_at11/111+34966593..34969643expressed protein
LOC_Os01g59910Os.27162.1.A1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910Os.27162.1.A1_s_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59910OsAffx.23861.1.S1_at11/111+34970111..34973135F-box domain containing protein, expressed
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8824.1.S1_at--685--3031Chr01:34967198..34967222 (25 bp)
AATCGACATTGCTGTTCCTCAATAC
LOC_Os01g59900
Os.8824.1.S1_at--968--331Chr01:34967177..34967201 (25 bp)
ATACAGCAAGCTATCTCCGTTGGTG
LOC_Os01g59900
Os.8824.1.S1_at--139--9971Chr01:34967090..34967114 (25 bp)
TACCGTTCCTCATTGTAGCAAGCTA
LOC_Os01g59900
Os.8824.1.S1_at--136--10031Chr01:34967075..34967099 (25 bp)
TAGCAAGCTATCTCCGCTGGTGACA
LOC_Os01g59900
Os.8824.1.S1_at--464--6111Chr01:34967045..34967069 (25 bp)
GAGTGCATCACTTGCAGGGACCGTT
LOC_Os01g59900
Os.8824.1.S1_at--980--8731Chr01:34966950..34966974 (25 bp)
TGTCACGCCAGTTTGTGGCTGCAAA
LOC_Os01g59900
Os.8824.1.S1_at--605--1571Chr01:34966890..34966914 (25 bp)
AGCTAGCTTCTTAATCATCTGTTGA
LOC_Os01g59900
Os.8824.1.S1_at--881--211Chr01:34966793..34966817 (25 bp)
ATTTGTGACCACGTGTCTTGTTCTT
LOC_Os01g59900
Os.8824.1.S1_at--509--6731Chr01:34966774..34966798 (25 bp)
GTTCTTTGTTACACTGTTTGCTCCG
LOC_Os01g59900
Os.8824.1.S1_at--188--6851Chr01:34966759..34966783 (25 bp)
GTTTGCTCCGTTTGTTGAACATCCG
LOC_Os01g59900
Os.8824.1.S1_at--1017--3031Chr01:34966657..34966681 (25 bp)
AATCGGCACGGTTCTGTTTGAGGCT
LOC_Os01g59900
Target Sequence 
AATCGACATTGCTGTTCCTCAATACAGCAAGCTATCTCCGTTGGTGCCGTCTGAGAGTGCAACATATCGTAATGTGTACA
ACAGCACTAGCGGCAGCAGAACTGACCCTACCGTTCCTCATTGTAGCAAGCTATCTCCGCTGGTGACATCTGAGAGTGCA
TCACTTGCAGGGACCGTTCCTGTGCTGAAGACATTGGAGCCGATCAAACGCAGCTCCAGCTGCTGCAAGGAGCAGCCTTT
GAGCTTTCTGTCACGCCAGTTTGTGGCTGCAAAGTACAAGGGGATGTTCTCACTATGGAGTCACAACCAGCTAGCTTCTT
AATCATCTGTTGATACATCCAACTCGTAAGCTGTTGGTTATCAACAAAATGCAAAACTTTTACCGCTTATGCCTTTATTA
TTTTGATTTGTGACCACGTGTCTTGTTCTTTGTTACACTGTTTGCTCCGTTTGTTGAACATCCGAAGAGATGTTATCGAA
AGTTGTCGCTCGAAGTATGTATGCATACTCGAGCTCNTTATCTTCCCTNATTTATTTGTTCAATCGGCACGGTTCTGTTT
GAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis