Browse Element(s) Details


Os.8842.1.S1_at

Description gb:AK119544.1
DB_XREF= gi:37989167
TID=Os.8842.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H01, full insert sequence.
FL= gb:AK105912.1 gb:AK119544.1 gb:AK065987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3262011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8842.1.S1_at--973--5791Chr07:19453240..19453264 (25 bp)
GACGCCGAGCAGCACTTCAACGCGT
LOC_Os07g32620
Os.8842.1.S1_at--559--6311Chr07:19452972..19452996 (25 bp)
GTGCCGTTCAAATCCGTTAAGTTTG
LOC_Os07g32620
Os.8842.1.S1_at--911--6751Chr07:19452957..19452981 (25 bp)
GTTAAGTTTGCTGGTTTCACCGCAG
LOC_Os07g32620
Os.8842.1.S1_at--346--10711Chr07:19452950..19452974 (25 bp)
TTGCTGGTTTCACCGCAGATTATGT
LOC_Os07g32620
Os.8842.1.S1_at--1026--771Chr07:19452929..19452953 (25 bp)
ATGTGCGCGCGCAATGAGTCCTCTT
LOC_Os07g32620
Os.8842.1.S1_at--506--1131Chr07:19452913..19452937 (25 bp)
AGTCCTCTTTACTCAATCCATTCGA
LOC_Os07g32620
Os.8842.1.S1_at--23--9911Chr07:19452904..19452928 (25 bp)
TACTCAATCCATTCGATGTCTCATG
LOC_Os07g32620
Os.8842.1.S1_at--1032--3591Chr07:19452895..19452919 (25 bp)
CATTCGATGTCTCATGTTGTGAACT
LOC_Os07g32620
Os.8842.1.S1_at--1026--8651Chr07:19452878..19452902 (25 bp)
TGTGAACTTGTGATTCCTGTTGGTT
LOC_Os07g32620
Os.8842.1.S1_at--864--8671Chr07:19452870..19452894 (25 bp)
TGTGATTCCTGTTGGTTGATCCGTT
LOC_Os07g32620
Os.8842.1.S1_at--83--8851Chr07:19452854..19452878 (25 bp)
TGATCCGTTTGGTATGGTGTCGAAT
LOC_Os07g32620
Target Sequence 
GACGCCGAGCAGCACTTCAACGCGTTCACCCTGGTCGCCCACCTGGGCGTCGCCGTGCCGCTCGGCATGGACAGGAGGCG
GGACAACTTCGTGGAGGCGGCGGAGCTGGAGCGCGCGGTGAGGTCGCTGATGGACGACGCGTCGGACGAGGGGAGGAAGG
CGAGGGCGAAGGCGGCGGAGACGAGGGCCGTTTGCCGGAAGGCCGTGGAGGAGGGCGGGTCGTCNGTCCACGGCGTTCCA
GAGGCTCACCGACGATATCGTCCGAAGGGGTGCCGTTCAAATCCGTTAAGTTTGCTGGTTTCACCGCAGATTATGTGCGC
GCGCAATGAGTCCTCTTTACTCAATCCATTCGATGTCTCATGTTGTGAACTTGTGATTCCTGTTGGTTGATCCGTTTGGT
ATGGTGTCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis