Browse Element(s) Details


Os.8861.1.S1_x_at

Description gb:AF140494.1
DB_XREF= gi:4768987
TID=Os.8861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8861 (NCBI UniGene Cluster)
UG_TITLE=60S ribosomal protein mRNA, partial cds
DEF=Oryza sativa 60S ribosomal protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g325207/1160S ribosomal protein L32, putative, expressed
LOC_Os09g325004/1160S ribosomal protein L32, putative, expressed
LOC_Os09g325322/1160S ribosomal protein L32, putative, expressed
LOC_Os08g413001/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8861.1.S1_x_at--657--6231Chr09:19414167..19414191 (25 bp)
GATGGCGGTTCCATTGCTGACGAAG
LOC_Os09g32520
Os.8861.1.S1_x_at--31--5393Chr09:19398712..19398736 (25 bp)
GAAGCAGTTCAAGAGGCCGCACAGC
LOC_Os09g32500
Os.8861.1.S1_x_at--104--9733Chr09:19398720..19398744 (25 bp)
TCAAGAGGCCGCACAGCGACCGCTA
LOC_Os09g32500
Os.8861.1.S1_x_at--631--1632Chr09:19398734..19398757 (24 bp)
AGCGACCGCTACATTGGCCTCAAGA
LOC_Os09g32500
Os.8861.1.S1_x_at--1091--4831NONE
GCTACATTGGCCTCAAGACAAGCTG
NONE
Os.8861.1.S1_x_at--920--11NONE
ATTGGCCTCAAGACAAGCTGGCGCA
NONE
Os.8861.1.S1_x_at--547--2211Chr09:19413416..19413440 (25 bp)
ACAAGCTGGCGCAGACCAAAGGGTA
LOC_Os09g32520
Os.8861.1.S1_x_at--1030--3311NONE
CACATTGATGCCCAATTATTGGATA
NONE
Os.8861.1.S1_x_at--538--151NONE
ATTATTGGATATGGTTCGGACAAGA
NONE
Os.8861.1.S1_x_at--1127--9151Chr09:19413309..19413328 (20 bp)
TGCCCAACAAGTTCAAGAAGACCAG
LOC_Os09g32520
Os.8861.1.S1_x_at--907--1453Chr09:19399798..19400234 (25 bp)
AGAAGTTTGTGGTGCACAACGTCTC
LOC_Os09g32500
Target Sequence 
GATGGCGGTTCCATTGCTGACGAAGAAGATCGTGAAGAAGCGGGTGAAGCAGTTCAAGAGGCCGCACAGCGACCGCTACA
TTGGCCTCAAGACAAGCTGGCGCAGACCAAAGGGTATTGACTCACGTGTCAGGAGGAAGTTCAAGGGATGCACATTGATG
CCCAATTATTGGATATGGTTCGGACAAGAAGACCAGGCATTACCTGCCCAACAAGTTCAAGAAGACCAGGCATTACCTGC
CCAACAAGTTCAAGAAGTTTGTGGTGCACAACGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8861.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis