Browse Element(s) Details


Os.8879.1.S1_at

Description gb:AK101482.1
DB_XREF= gi:32986691
TID=Os.8879.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041F01, full insert sequence.
FL= gb:AK101482.1 gb:AK105391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g437606/11isoleucyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_at11/116+26354718..26357951expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_x_at11/116+26354718..26357951expressed protein
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8879.1.S1_at--66--9731Chr06:26343293..26343317 (25 bp)
TAATTCCAAAGATGGCGGCGCCACC
LOC_Os06g43760
Os.8879.1.S1_at--1077--3591Chr06:26343565..26343589 (25 bp)
CATTGCAAGGGTTTCTCCAGTGGTC
LOC_Os06g43760
Os.8879.1.S1_at--159--9231Chr06:26343580..26343604 (25 bp)
TCCAGTGGTCACAGATGATCTCCTT
LOC_Os06g43760
Os.8879.1.S1_at--903--4131Chr06:26343730..26343750 (21 bp)
CGCTGGCAACCGTGAGCATTTTGAT
LOC_Os06g43760
Os.8879.1.S1_at--153--6531Chr06:26343907..26343931 (25 bp)
GATTTCATTGAAGGCTTCCCACCAA
LOC_Os06g43760
Os.8879.1.S1_at--168--991Chr06:26343969..26343993 (25 bp)
AGGAGATTTCTACCTGGCTACTCGT
LOC_Os06g43760
Os.8879.1.S1_at--466--3911Chr06:26343982..26344006 (25 bp)
CTGGCTACTCGTTCTTGATTTTTCT
NONE
Os.8879.1.S1_at--862--10371Chr06:26344042..26344066 (25 bp)
TTTTACTGCAATCATTTTACCCCGG
NONE
Os.8879.1.S1_at--371--4551Chr06:26344067..26344091 (25 bp)
GCCCTATTCTATTTGTGCCCACAAA
NONE
Os.8879.1.S1_at--534--2991Chr06:26344094..26344118 (25 bp)
AATGTATGTGGTTTCATCTGCCATG
NONE
Os.8879.1.S1_at--407--5531Chr06:26344159..26344183 (25 bp)
GAAAACTCGTGTATGCTGTACTGAA
NONE
Target Sequence 
TAATTCCAAAGATGGCGGCGCCACCAGATGCAGTAATGATCTGTGAGGAGTCTCACAATGTACAAGACATGTCGTTTGTC
ATTTACATTGCAAGGGTTTCTCCAGTGGTCACAGATGATCTCCTTGTCCATGCCGCTGGCAACCGTGAGCATTTTGATGC
ATTAAAAGTATATTTACTGTCAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGATTACGGTGG
ATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGAAAACATGTTTTTCTTAGTACAGGAGATTTCTACCTGGCT
ACTCGTTCTTGATTTTTCTTTCAAGCATCCCAATTTTGAGTGATTTATCTTTTTTTTTACTGCAATCATTTTACCCCGGG
CCCTATTCTATTTGTGCCCACAAAGCAATGTATGTGGTTTCATCTGCCATGAAAGAATGAAAGGGNTACTATCATATTGA
ATGGTCTAATCGAAAACTCGTGTATGCTGTACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis