Browse Element(s) Details


Os.8880.1.S1_a_at

Description gb:AK102417.1
DB_XREF= gi:32987626
TID=Os.8880.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8880 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for rabbit eukaryotic release factor (T171 gene), partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093C09, full insert sequence.
FL= gb:AK060440.1 gb:AK102417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3557011/11Tryptophanyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8880.1.S1_a_at--64--2251Chr12:21593281..21593305 (25 bp)
AAATATGCGTTCTCAGGTGGCCGGG
LOC_Os12g35570
Os.8880.1.S1_a_at--207--8431Chr12:21593263..21593287 (25 bp)
GGCCGGGACTCAATTGAGCTCCATA
LOC_Os12g35570
Os.8880.1.S1_a_at--667--5911Chr12:21592827..21593253 (25 bp)
GAGCTAACCTTGATGTGGATGTTCC
LOC_Os12g35570
Os.8880.1.S1_a_at--857--7511Chr12:21592813..21592837 (25 bp)
GTGGATGTTCCAATCAAGTACCTGA
LOC_Os12g35570
Os.8880.1.S1_a_at--305--3071Chr12:21592802..21592826 (25 bp)
AATCAAGTACCTGAACTTCTTCCTT
LOC_Os12g35570
Os.8880.1.S1_a_at--608--771Chr12:21592222..21592246 (25 bp)
ATGTCCGAAGTGATCTCTAGAATTT
LOC_Os12g35570
Os.8880.1.S1_a_at--1152--5051Chr12:21592193..21592217 (25 bp)
GCAGCATTCGTGTGTTTCATGACTT
LOC_Os12g35570
Os.8880.1.S1_a_at--311--5691Chr12:21592173..21592197 (25 bp)
GACTTATATTTGTAGGCTGGCCACT
LOC_Os12g35570
Os.8880.1.S1_a_at--46--6931Chr12:21592162..21592186 (25 bp)
GTAGGCTGGCCACTCGTAATATTTG
LOC_Os12g35570
Os.8880.1.S1_a_at--515--7731Chr12:21592138..21592162 (25 bp)
GGTGGCACGCTTGATTTTGCAAATC
LOC_Os12g35570
Os.8880.1.S1_a_at--793--9831Chr12:21592089..21592113 (25 bp)
TAAAGCCTGCTCCATCAATATAGAA
LOC_Os12g35570
Target Sequence 
AAATATGCGTTCTCAGGTGGCCGGGACTCAATTGAGCTCCATAGAAAACTTGGAGCTAACCTTGATGTGGATGTTCCAAT
CAAGTACCTGAACTTCTTCCTTGAAGATGACAATGAGCTCGAGCACATAAAGAAGGAGTACAAGGAAGGAAGGATGCTGA
CGGGTGAAGTGAAGCAGCGCCTTGTTGCAGTTCTATCCGAACTGGTTGCGAGACATCAAAGAGCTAGAGCACTAGTGACC
GAGGAGATGGTCGATGTATTTATGGCGGCGAGACCTCTTCCCAATATGTTTGGCTGAGTCTGATGTCAAAAACTGCCTGG
AGATATTTGCTACTAGCTGGATAAGATGTCCGAAGTGATCTCTAGAATTTGGAAGCAGCATTCGTGTGTTTCATGACTTA
TATTTGTAGGCTGGCCACTCGTAATATTTGGTGGCACGCTTGATTTTGCAAATCAGTTGAGGATAAATTTATTTATCTTA
AAGCCTGCTCCATCAATATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8880.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis