Browse Element(s) Details


Os.8913.1.S1_at

Description gb:AK101889.1
DB_XREF= gi:32987098
TID=Os.8913.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070M16, full insert sequence.
FL= gb:AK101889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0326011/11homoaconitate hydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed
LOC_Os02g03240Os.41695.3.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.2.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.5.S1_x_at2/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.4.S1_x_at1/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003994molecular_functionaconitate hydratase activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8913.1.S1_at--828--9491Chr02:1305919..1305943 (25 bp)
TCTCGTTCCGGCGACACAAAAGGTG
LOC_Os02g03260
Os.8913.1.S1_at--775--5671Chr02:1305802..1305826 (25 bp)
GACATTTATAGCATCCCTGTACCAG
LOC_Os02g03260
Os.8913.1.S1_at--887--4271Chr02:1305787..1305811 (25 bp)
CCTGTACCAGGAGCCGGTGGCAAAA
LOC_Os02g03260
Os.8913.1.S1_at--440--8511Chr02:1305770..1305794 (25 bp)
TGGCAAAACTTGCTCACAGATATTT
LOC_Os02g03260
Os.8913.1.S1_at--78--7931Chr02:1305736..1305760 (25 bp)
GGTTGTGATACACCAGCTAGCCCTA
LOC_Os02g03260
Os.8913.1.S1_at--1044--3711Chr02:1305720..1305744 (25 bp)
CTAGCCCTAGTTGTGGTGCTTGTTT
LOC_Os02g03260
Os.8913.1.S1_at--54--5491Chr02:1305208..1305232 (25 bp)
GAACAGGAATTTCCCCGGCAGGATG
LOC_Os02g03260
Os.8913.1.S1_at--587--8251Chr02:1305170..1305194 (25 bp)
GGCAGATCTACCTGGCTTCGCCGTT
LOC_Os02g03260
Os.8913.1.S1_at--1020--5851Chr02:1305052..1305076 (25 bp)
GAGCCATTGGCGTCTTGTACTACTG
LOC_Os02g03260
Os.8913.1.S1_at--1132--10551Chr02:1304938..1304962 (25 bp)
TTCTATTTCCTAATTGTGTACTGGG
LOC_Os02g03260
Os.8913.1.S1_at--314--2111Chr02:1304895..1304919 (25 bp)
ACATGATTTTGCTTGTGGACAGAGC
LOC_Os02g03260
Target Sequence 
TCTCGTTCCGGCGACACAAAAGGTGTGGATGGACATTTATAGCATCCCTGTACCAGGAGCCGGTGGCAAAACTTGCTCAC
AGATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTAGTTGTGGTGCTTGTTTGGGTGGTCCTCGTGATACATAT
GCTCGCATGAATGAACCTATGGTGTGTGTGTCGACGACGAACAGGAATTTCCCCGGCAGGATGGGGCACAAGGAAGGGCA
GATCTACCTGGCTTCGCCGTTCACCGCGGCGGCTTCAGCCCTCACCGGATACGTCACTGACCCCAGGGACTTCCTGATGT
AAACAGTTAAAACACAAAAGGAGTTGGATGCTCAGAGCCATTGGCGTCTTGTACTACTGTACAACGGCTGTTTTTTCTTG
TTCAATTTCAGGTGTAGTGTAGGTTTGTCCCCTTGGGTAATAACAACCAATAAGTTATTTTCCTTTCATTCTATTTCCTA
ATTGTGTACTGGGATATTATATATTTGGTGGACATGATTTTGCTTGTGGACAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis