Browse Element(s) Details


Os.8920.1.S1_at

Description gb:AY297447.1
DB_XREF= gi:31745666
TID=Os.8920.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8920 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds.
PROD=AP2 domain transcription factor EREBP
FL= gb:AY297447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4779011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed
LOC_Os07g47840Os.51758.2.S1_at11/117+28564422..28565349expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8920.1.S1_at--527--4171Chr07:28539431..28539455 (25 bp)
CGCCATCCCGTGCAGGGAGTTCATG
LOC_Os07g47790
Os.8920.1.S1_at--93--7131Chr07:28539394..28539418 (25 bp)
GTCATGGCGGGCTTCTTCCACCAGC
LOC_Os07g47790
Os.8920.1.S1_at--106--5911Chr07:28539262..28539286 (25 bp)
GAGCTCTGGAGCTTTGATAACATCC
LOC_Os07g47790
Os.8920.1.S1_at--789--10251Chr07:28539250..28539274 (25 bp)
TTTGATAACATCCACACGGCCGTGC
LOC_Os07g47790
Os.8920.1.S1_at--227--1951Chr07:28539235..28539259 (25 bp)
ACGGCCGTGCCGATGTGAGATCGAT
LOC_Os07g47790
Os.8920.1.S1_at--523--6431Chr07:28539205..28539229 (25 bp)
GATCATTCAGATCGATGCTAGCTCA
LOC_Os07g47790
Os.8920.1.S1_at--780--4051Chr07:28539196..28539217 (22 bp)
CGATGCTAGCTCATGTGTTTTTTAA
LOC_Os07g47790
Os.8920.1.S1_at--75--6812Chr12:14570807..14570829 (22 bp)
GTTTTTTAATTATATCTTCACAGCA
NONE
Os.8920.1.S1_at--154--7411Chr07:28539074..28539098 (25 bp)
GTGATTTATCGGATTGAACTCTCAA
LOC_Os07g47790
Os.8920.1.S1_at--209--5451Chr07:28539059..28539083 (25 bp)
GAACTCTCAAGTGACCGACTTCTGA
LOC_Os07g47790
Os.8920.1.S1_at--302--9731Chr07:28539053..28539077 (25 bp)
TCAAGTGACCGACTTCTGAGTTCTT
LOC_Os07g47790
Target Sequence 
CGCCATCCCGTGCAGGGAGTTCATGGACTACGACGCCGTCATGGCGGGCTTCTTCCACCAGCCCTACGTCGTCGCCGACG
GCGTGCCGGCCGTGCCGGCGGAGGAGGCGCCCACGGTGGCGTACGTGCACCACCACCTGCCGCCGCAGCCGCAGCAGGAC
GCGGGGCTGGAGCTCTGGAGCTTTGATAACATCCACACGGCCGTGCCGATGTGAGATCGATCTGATGATCATTCAGATCG
ATGCTAGCTCATGTGTTTTTTAATTATATCTTCACAGCAGAAACAAAAAAAAGTTCAATTCAGTTTATTTTGTTGTTATA
CGTTTTAAAATGTTTCATTAGGTTTTCATGTTATAGGAGTGATTTATCGGATTGAACTCTCAAGTGACCGACTTCTGAGT
TCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis