Browse Element(s) Details


Os.8953.1.S1_at

Description gb:AK111713.1
DB_XREF= gi:37988376
TID=Os.8953.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020E17, full insert sequence.
FL= gb:AK111713.1 gb:AK111888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g109909/11retinoblastoma-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8953.1.S1_at--1084--5411Chr03:5625810..5625834 (25 bp)
GAACCAGCTGAAGCCGTGAACTCAA
LOC_Os03g10990
Os.8953.1.S1_at--499--3071Chr03:5625712..5625736 (25 bp)
GAATAAGTCCAACGGCAAGTCCCCA
LOC_Os03g10990
Os.8953.1.S1_at--30--2851Chr03:5625696..5625720 (25 bp)
AAGTCCCCAGGGTCCAATGGCAAGC
LOC_Os03g10990
Os.8953.1.S1_at--919--3831Chr03:5625662..5625686 (25 bp)
CTGCTAACGGGAACAGCTCTGCTGT
LOC_Os03g10990
Os.8953.1.S1_at--62--6311Chr03:5625615..5625639 (25 bp)
GATGAGATCTGACCTGTCCATCATT
LOC_Os03g10990
Os.8953.1.S1_at--955--2011Chr03:5625580..5625604 (25 bp)
ACTACTTTAGTTCGTGGAGCCCCTG
LOC_Os03g10990
Os.8953.1.S1_at--767--10192Chr09:19676928..19676963 (24 bp)
TATTTAGGCCTGTTTATTTCTTCAC
NONE
Os.8953.1.S1_at--285--10531Chr03:5625386..5625421 (25 bp)
TTCACCCTTTAGATTGTTCTGATCG
LOC_Os03g10990
Os.8953.1.S1_at--517--6831Chr03:5625322..5625346 (25 bp)
GTTTCAAGATCACTGCGCACATGCG
LOC_Os03g10990
Os.8953.1.S1_at--72--2091NONE
ACATGCGTCTTGTGGTTACGTACAT
NONE
Os.8953.1.S1_at--233--10211Chr03:5625264..5625287 (24 bp)
TATTTTTTCCTATGCCTGTTGCTGC
NONE
Target Sequence 
GAACCAGCTGAAGCCGTGAACTCAAAGAGGAGGCGGAGGCTGTCGGCTAAGGGCCTCGAGCTGCAGCAAGCCGAGAAGGG
CAAAAAACCAACAACAAAGAATAAGTCCAACGGCAAGTCCCCAGGGTCCAATGGCAAGCAATTGGAGCCTGCTAACGGGA
ACAGCTCTGCTGTTGATGATGAAGCCNCCGAAGACGATGAGATCTGACCTGTCCATCATTGATAACTTTAACTACTTTAG
TTCGTGGAGCCCCTGTTGAGAACAGAGGGAATATCTCTGTGTAGTATGCATTAGAAACGATTGAGGAACTATGTGGTGCG
CTGAGGCAAAATGAAATCGTTAAATGGAAGTGGGTGGATCTATGTTGAGATTAATCATCTGTGTTGCATTTAATATTTAG
GCCTGTTTATTTCTTCACTTTCCTTTCACCCTTTAGATTGTTCTGATCGATAAGGTTTCAGATAACAGTAGATCGTTGTT
ACAGTGAAGTTTCAAGATCACTGCGCACATGCGTCTTGTGGTTACGTACATGACTTTACAGATATTTTATTTTTTCCTAT
GCCTGTTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis