Browse Element(s) Details


Os.8966.1.S1_at

Description gb:CB668743
DB_XREF= gi:29672468
DB_XREF=OSJNEd16L20.r
CLONE=OSJNEd16L20
TID=Os.8966.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.8966 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198663.1 (A.thaliana) DNA repair protein RAD23 homolog (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2661410/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26560OsAffx.12207.1.S1_at11/112+15589114..15591960expressed protein
LOC_Os02g26570Os.21854.2.S1_x_at2/112+15603222..15605304hypothetical protein
LOC_Os02g26580NANA2+15606200..15606556hypothetical protein
LOC_Os02g26590NANA2+15607457..15607705hypothetical protein
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8966.1.S1_at--913--6211NONE
GATGGCAAAAGCAAGATAGTTTGGT
NONE
Os.8966.1.S1_at--914--7511Chr02:15621785..15621809 (25 bp)
GTGGAAAGATATGAAAGACCACTTT
LOC_Os02g26614
Os.8966.1.S1_at--234--5571Chr02:15621797..15621821 (25 bp)
GAAAGACCACTTTGACAATACTACT
LOC_Os02g26614
Os.8966.1.S1_at--566--5851Chr02:15621801..15621825 (25 bp)
GACCACTTTGACAATACTACTGATA
LOC_Os02g26614
Os.8966.1.S1_at--749--1951Chr02:15621819..15621843 (25 bp)
ACTGATAATTTGATTCTACCAGCAC
LOC_Os02g26614
Os.8966.1.S1_at--486--9531Chr02:15621833..15621857 (25 bp)
TCTACCAGCACCGAAGCAGATATCT
LOC_Os02g26614
Os.8966.1.S1_at--804--1711Chr02:15621836..15621860 (25 bp)
ACCAGCACCGAAGCAGATATCTATG
LOC_Os02g26614
Os.8966.1.S1_at--681--6511Chr02:15621851..15621875 (25 bp)
GATATCTATGGTCTAGCTGCGTCGA
LOC_Os02g26614
Os.8966.1.S1_at--788--10151Chr02:15621853..15621877 (25 bp)
TATCTATGGTCTAGCTGCGTCGAAC
LOC_Os02g26614
Os.8966.1.S1_at--342--9531Chr02:15621855..15621879 (25 bp)
TCTATGGTCTAGCTGCGTCGAACCT
LOC_Os02g26614
Os.8966.1.S1_at--427--3691Chr02:15622526..15622550 (25 bp)
CTTTGTGCTATATGGATTGTTAGTG
LOC_Os02g26614
Target Sequence 
GATGGCAAAAGCAAGATAGTTTGGTGGAAAGATATGAAAGACCACTTTGACAATACTACTGATAATTTGATTCTACCAGC
ACCGAAGCAGATATCTATGGTCTAGCTGCGTCGAACCTTGTTGCTGGAAGCAATTTAGAAGGGACTGTTCAGTCAATTNT
TGAAATGGGTGGAGGAGCTTGGGACCGTGACACTGTTATGCGTGNTNTGGGAGNTGNATACAACAATCCAGAACGGGCTG
TGGAGTATTTGTATNCTGGGCTTNCTGGGCAAGCTGAGGCCTNTGCNGTAGTTCAAGCANTTTCTGTCCCTGNTGCAGTT
CAAGCATTTNCCACGAGTGGCTAACCAGTTGATTTGCTAATTTGCTGATTTGCTGTGTTTAAATTTTGTGTTGTATTGGA
TGTTTGTCGGGTTGTGATGGATGCTAATTGGGCTGTAACCTTTGTGCTATATGGATTGTTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis