Browse Element(s) Details


Os.9035.1.S1_at

Description gb:AK103361.1
DB_XREF= gi:32988570
TID=Os.9035.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126N01, full insert sequence.
FL= gb:AK103361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3241211/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os06g061901/11ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9035.1.S1_at--625--2491Chr07:19275092..19275116 (25 bp)
AACTTGGGCTGCTGACAGTTAACTG
LOC_Os07g32412
Os.9035.1.S1_at--198--2571Chr07:19275072..19275096 (25 bp)
AACTGGTTTATGTAGCGTCGTAGAC
LOC_Os07g32412
Os.9035.1.S1_at--1046--7191Chr07:19275056..19275080 (25 bp)
GTCGTAGACTTTTTGCTGGTAGCGC
LOC_Os07g32412
Os.9035.1.S1_at--506--131Chr07:19275025..19275049 (25 bp)
ATTCACTGCGCAGAGCTTGCAAGCT
LOC_Os07g32412
Os.9035.1.S1_at--376--4931Chr07:19275011..19275035 (25 bp)
GCTTGCAAGCTTTATCTCCTTGTTA
LOC_Os07g32412
Os.9035.1.S1_at--140--6771Chr07:19274990..19275014 (25 bp)
GTTAATACTATCTCTCTCTAGTCTC
LOC_Os07g32412
Os.9035.1.S1_at--98--10052Chr06:2863946..2864333 (25 bp)
TAGTCTCTACCATGTAGTTGGGCAA
LOC_Os06g06190
Os.9035.1.S1_at--852--2751Chr07:19274929..19274953 (25 bp)
AAGACCCTTTTAACTGTGTTGCTCG
LOC_Os07g32412
Os.9035.1.S1_at--718--7411Chr07:19274914..19274938 (25 bp)
GTGTTGCTCGTGAACTGGATTGTGC
LOC_Os07g32412
Os.9035.1.S1_at--1117--9471Chr07:19274887..19274911 (25 bp)
TCTCCCGTTTAATCTGCAGCTCTTG
LOC_Os07g32412
Os.9035.1.S1_at--199--5071Chr07:19274872..19274896 (25 bp)
GCAGCTCTTGCAACATGGTGAATTG
LOC_Os07g32412
Target Sequence 
AACTTGGGCTGCTGACAGTTAACTGGTTTATGTAGCGTCGTAGACTTTTTGCTGGTAGCGCCTTGCCATTCACTGCGCAG
AGCTTGCAAGCTTTATCTCCTTGTTAATACTATCTCTCTCTAGTCTCTACCATGTAGTTGGGCAAAATGTAGATGATGCC
ACCAAGACCCTTTTAACTGTGTTGCTCGTGAACTGGATTGTGCCCTCTCCCGTTTAATCTGCAGCTCTTGCAACATGGTG
AATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis