Browse Element(s) Details


Os.9086.1.S1_at

Description gb:AK073446.1
DB_XREF= gi:32983469
TID=Os.9086.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043C24, full insert sequence.
FL= gb:AK073446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1021011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10160OsAffx.3182.1.S1_at11/113+5134654..5134890hypothetical protein
LOC_Os03g10170NANA3+5136621..5137763hypothetical protein
LOC_Os03g10180Os.14877.1.S1_at10/113+5140681..5145886expressed protein
LOC_Os03g10190Os.5952.1.S1_at11/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10190Os.5952.4.S1_x_at7/113+5146424..5149812Seryl-tRNA synthetase, putative, expressed
LOC_Os03g10200OsAffx.3183.1.S1_at11/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10200Os.6426.1.S1_at10/113+5154255..5158348UPF0326 protein hag1, putative, expressed
LOC_Os03g10210Os.9086.1.S1_at11/113+5159829..5161302Homeobox domain containing protein, expressed
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009965biological_processleaf morphogenesis
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9086.1.S1_at--588--2951Chr03:5160359..5160383 (25 bp)
AAGGCGAAGCTAGCAGCTGTCGCCG
LOC_Os03g10210
Os.9086.1.S1_at--636--4511Chr03:5160206..5160230 (25 bp)
GCCGACCTCACCTACATGAGTGAGT
LOC_Os03g10210
Os.9086.1.S1_at--401--2151Chr03:5160172..5160196 (25 bp)
ACAGCTACATGCTGGAGTTGGCGGC
LOC_Os03g10210
Os.9086.1.S1_at--381--4551Chr03:5160085..5160109 (25 bp)
GCGCCGACGGAGGATTAACTAGCTA
LOC_Os03g10210
Os.9086.1.S1_at--736--10491Chr03:5160047..5160071 (25 bp)
TTAATGGATCGATCAATTGCAGGGT
LOC_Os03g10210
Os.9086.1.S1_at--354--7071Chr03:5160021..5160045 (25 bp)
GTAATTCAGTAGTGGTGGTGTTTAT
LOC_Os03g10210
Os.9086.1.S1_at--342--8771Chr03:5159963..5159987 (25 bp)
TGTTGCCCTAACGAAAAATCTTTAG
LOC_Os03g10210
Os.9086.1.S1_at--792--5511Chr03:5159951..5159975 (25 bp)
GAAAAATCTTTAGCGGTGACTTTGC
LOC_Os03g10210
Os.9086.1.S1_at--656--1631Chr03:5159940..5159964 (25 bp)
AGCGGTGACTTTGCTAAGCCATGTA
LOC_Os03g10210
Os.9086.1.S1_at--165--5232Chr09:10768783..10769049 (25 bp)
GAATATCATGCAAGTGGTTGCCATG
NONE
Os.9086.1.S1_at--429--8571Chr03:5159862..5159886 (25 bp)
TGGTTGCCATGGACTGATTAATTAT
LOC_Os03g10210
Target Sequence 
AAGGCGAAGCTAGCAGCTGTCGCCGCGGCGACGACCGGCGGCGGTGGTGGCGGCGGCGGCGGCAGCAGCAGCCCGACCTC
GTCGTCGTTCTCCACGGTGACGTACCACCCGGCGCTGGCGGGGCAGTTNGGCGTGGAGGCGGCGGCCGAGGAGGCCGACC
TCACCTACATGAGTGAGTACGNGTACAACAGCTACATGCTGGAGTTGGCGGCGGCCGGCTNCTGCGGCGGGGTNTNCGAC
CAATTCAGNTGAGCGCCGCCACTNGCCGGNGCCGGCGCCGACGGAGGATTAACTAGCTACAGTAGCTGTTAATTAATGGA
TCGATCAATTGCAGGGTAGTAATTCAGTAGTGGTGGTGTTTATTAGTAGTATCAATGATCGATATATCATCAGTNGTGTT
GCCCTAACGAAAAATCTTTAGCGGTGACTTTGCTAAGCCATGTAGATTATTAAATTGGATGTCTTTGTAAGTATATGTGT
TTAGAATATCATGCAAGTGGTTGCCATGGACTGATTAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis