Browse Element(s) Details


Os.9126.1.S2_at

Description gb:AK120922.1
DB_XREF= gi:37990545
TID=Os.9126.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035E19, full insert sequence.
FL= gb:AK107860.1 gb:AK120922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g423806/11expressed protein
LOC_Os12g423901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein
LOC_Os12g42390Os.9126.1.S2_at1/1112+26311474..26311860expressed protein
LOC_Os12g42400Os.22707.1.S1_at11/1112+26313290..26317662CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os12g42410OsAffx.32156.1.S1_at11/1112+26325237..26326071hypothetical protein
LOC_Os12g42420Os.21335.1.A1_at10/1112+26329666..26331819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9126.1.S2_at--1060--2431Chr12:26306181..26306205 (25 bp)
AAAAGGGCACTGTTGCTGGCAGGAT
LOC_Os12g42380
Os.9126.1.S2_at--699--9831Chr12:26306126..26306150 (25 bp)
TAAAGGGCGCTTTCTTCCAAGAGAG
LOC_Os12g42380
Os.9126.1.S2_at--442--6552Chr12:26311585..26311606 (22 bp)
GATTATGACCGCTTCATGAACTTTC
LOC_Os12g42390
Os.9126.1.S2_at--294--3851Chr12:26306025..26306049 (25 bp)
CTGACTTCGCTACCATCTTAAGTAT
LOC_Os12g42380
Os.9126.1.S2_at--314--751Chr12:26305973..26305997 (25 bp)
ATGTAACAAGATCAGGCGCCTCAAG
LOC_Os12g42380
Os.9126.1.S2_at--195--10631Chr12:26305939..26305963 (25 bp)
TTCGTCCCTCTCATGAACGTCATGA
LOC_Os12g42380
Os.9126.1.S2_at--287--871Chr12:26305848..26305872 (25 bp)
ATGGCTGGTCTGCATAGTGATTCAA
NONE
Os.9126.1.S2_at--198--131Chr12:26305807..26305831 (25 bp)
ATTCAGGCCTATGGCCTTGTTGCTA
NONE
Os.9126.1.S2_at--580--5491Chr12:26305782..26305806 (25 bp)
GAACAGTGGTTTCTTCTTTCACCTT
NONE
Os.9126.1.S2_at--820--8111Chr12:26305746..26305770 (25 bp)
GGACTTTGTTCCATTTATCTTAGAA
NONE
Os.9126.1.S2_at--1059--971Chr12:26305725..26305749 (25 bp)
AGAAATTTTGTTGCCCTTGAGTCCG
NONE
Target Sequence 
AAAAGGGCACTGTTGCTGGCAGGATAGGGAGAAAATGCACTCTCTCAAGAGATTCTAAAGGGCGCTTTCTTCCAAGAGAG
AGTAAGGGGGGAGACATCGGNGGAAATGCTACAGAGAGTGAAGTTGATTATGACCGCTTCATGAACTTTCAGGCACCTGA
CTTCGCTACCATCTTAAGTATTTTGAAAGGCTGGAAAGGCATGAAGCAATGTAACAAGATCAGGCGCCTCAAGGATCCTG
ACTTCGTCCCTCTCATGAACGTCATGAGCAACACTGGATATGTGACCGAGGATGATGGTCACTATGATGTGCTGAAAGTC
TTGATGCATGCAGATGGCTGGTCTGCATAGTGATTCAAGCTCTCAAATCAAAACATTCAGGCCTATGGCCTTGTTGCTAG
AACAGTGGTTTCTTCTTTCACCTTTAAAACTTGATGGACTTTGTTCCATTTATCTTAGAAATTTTGTTGCCCTTGAGTCC
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9126.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis