Browse Element(s) Details


Os.9226.1.S1_a_at

Description gb:AK120527.1
DB_XREF= gi:37990150
TID=Os.9226.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127C20, full insert sequence.
FL= gb:AK061468.1 gb:AK104424.1 gb:AK104116.1 gb:AK120527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1587011/1150S ribosomal protein L4, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0009547cellular_componentplastid ribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9226.1.S1_a_at--129--2771Chr03:8733317..8733341 (25 bp)
AAGACCAGGGACTTCGTGGCCGCGC
LOC_Os03g15870
Os.9226.1.S1_a_at--972--8791Chr03:8733378..8733402 (25 bp)
TGTTCTTCGCCACGGATTTTGCAGA
LOC_Os03g15870
Os.9226.1.S1_a_at--1107--10391Chr03:8733394..8733418 (25 bp)
TTTTGCAGACAATGTGCGGCTCAGC
LOC_Os03g15870
Os.9226.1.S1_a_at--516--2231Chr03:8733402..8733426 (25 bp)
ACAATGTGCGGCTCAGCGGAAGGAA
LOC_Os03g15870
Os.9226.1.S1_a_at--478--4691Chr03:8733417..8733441 (25 bp)
GCGGAAGGAACATTGGCTCCCTCAA
LOC_Os03g15870
Os.9226.1.S1_a_at--690--2511Chr03:8733425..8733449 (25 bp)
AACATTGGCTCCCTCAAGATGCTAA
LOC_Os03g15870
Os.9226.1.S1_a_at--743--3471Chr03:8733454..8733478 (25 bp)
CAGGACTCTCAACCTATACGACATC
LOC_Os03g15870
Os.9226.1.S1_a_at--1145--9711Chr03:8733462..8733486 (25 bp)
TCAACCTATACGACATCCTCGATGC
LOC_Os03g15870
Os.9226.1.S1_a_at--280--4431Chr03:8733512..8733536 (25 bp)
GCCATTAACTATCTCAACTCCAGGT
LOC_Os03g15870
Os.9226.1.S1_a_at--766--431Chr03:8733522..8733546 (25 bp)
ATCTCAACTCCAGGTATGGTGCCAC
LOC_Os03g15870
Os.9226.1.S1_a_at--516--811Chr03:8733537..8733561 (25 bp)
ATGGTGCCACCGTTTTTGATGAATA
LOC_Os03g15870
Target Sequence 
AAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTT
TGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACA
TCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGAT
GAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9226.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis