Browse Element(s) Details


Os.9254.1.S1_at

Description gb:AK099721.1
DB_XREF= gi:32984930
TID=Os.9254.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088F16, full insert sequence.
FL= gb:AK099721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3899011/11DNA helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein
LOC_Os03g38980Os.27850.1.S1_at11/113+21619910..21628223Lysyl-tRNA synthetase, putative, expressed
LOC_Os03g38990Os.9254.1.S1_at11/113+21628349..21635002DNA helicase family protein, expressed
LOC_Os03g39000Os.8893.1.S1_at10/113+21636579..21639637Inositol monophosphatase 3, putative, expressed
LOC_Os03g39010Os.22996.1.S1_a_at11/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39010OsAffx.22179.1.S1_at1/113+21640127..21641888Possible lysine decarboxylase family protein, expressed
LOC_Os03g39020Os.50595.1.S1_at11/113+21642000..21647792kinesin heavy chain, putative, expressed
LOC_Os03g39040OsAffx.22944.5.S1_at11/113+21655685..21657943Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004003molecular_functionATP-dependent DNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9254.1.S1_at--181--8971Chr03:21634524..21634548 (25 bp)
TAACCCTTAACCGTGATAGCCCGTG
LOC_Os03g38990
Os.9254.1.S1_at--189--6491Chr03:21634538..21634562 (25 bp)
GATAGCCCGTGCTTATCGCAAAGAT
LOC_Os03g38990
Os.9254.1.S1_at--472--8171Chr03:21634597..21634621 (25 bp)
GGAACATCGTGCACTTCAAACTGGT
LOC_Os03g38990
Os.9254.1.S1_at--12--8051Chr03:21634636..21634660 (25 bp)
GGAGATACTGTCATTCGACTTTTAT
LOC_Os03g38990
Os.9254.1.S1_at--384--4831Chr03:21634701..21634725 (25 bp)
GCTCAGGAGTGGATCAATTTCGTCT
LOC_Os03g38990
Os.9254.1.S1_at--108--3131Chr03:21634716..21634740 (25 bp)
AATTTCGTCTTGACTGGCCCTGTTC
LOC_Os03g38990
Os.9254.1.S1_at--45--3771Chr03:21634745..21634769 (25 bp)
CTCTTCTTCTGTGGCTTATGGAAAT
LOC_Os03g38990
Os.9254.1.S1_at--744--10411Chr03:21634790..21634814 (25 bp)
TTATATGTCCGTTCTTTCAGCTGAT
LOC_Os03g38990
Os.9254.1.S1_at--1019--10211Chr03:21634838..21634862 (25 bp)
TATTCATCCATGTGCAAATCTACCA
LOC_Os03g38990
Os.9254.1.S1_at--3--6651Chr03:21634924..21634948 (25 bp)
GTTGACTGTACTGAACTTCGCATGA
LOC_Os03g38990
Os.9254.1.S1_at--823--9751Chr03:21634953..21634977 (25 bp)
TAATCTGTATCTCATCCATCTTGCT
LOC_Os03g38990
Target Sequence 
TAACCCTTAACCGTGATAGCCCGTGCTTATCGCAAAGATAGTGAAGAGATATATCCAAACGATGCTTGTGATAGGAACAT
CGTGCACTTCAAACTGGTGCAATATGGCCAATGGAGATACTGTCATTCGACTTTTATAGATTGGAAACAGATCGCTGTGA
GACTGAACAGATAATTAGCTCAGGAGTGGATCAATTTCGTCTTGACTGGCCCTGTTCTGGTCTCTTCTTCTGTGGCTTAT
GGAAATGAAACCTCAGTTATGTGTTTTTATATGTCCGTTCTTTCAGCTGATGTACAATGATAGAAGACTAATTTTATTCA
TCCATGTGCAAATCTACCATAGTTTTTTGCATGGAGTTTTGAAACTTGGGTCCACAAAAATAGTAATAATAGGATAGGAG
GTTGACTGTACTGAACTTCGCATGATAATTAATCTGTATCTCATCCATCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis