Browse Element(s) Details


Os.9258.1.S1_at

Description gb:AK100745.1
DB_XREF= gi:32985954
TID=Os.9258.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118H18, full insert sequence.
FL= gb:AK072679.1 gb:AK100745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6408011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64020Os.15427.1.S1_at11/113+36119589..36122138expressed protein
LOC_Os03g64030Os.51249.1.S1_at11/113+36123677..36125345expressed protein
LOC_Os03g64030Os.18556.1.S1_x_at10/113+36123677..36125345expressed protein
LOC_Os03g64050Os.15725.1.S1_at11/113+36128251..36129562expressed protein
LOC_Os03g64060OsAffx.25815.1.S1_s_at11/113+36132339..36132822expressed protein
LOC_Os03g64070Os.21276.1.S1_at10/113+36142945..36144143Lysine Decarboxylase, putative, expressed
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9258.1.S1_at--443--8091Chr03:36152247..36152271 (25 bp)
GGAGCGTCAACGAATGCTTGCCATT
LOC_Os03g64080
Os.9258.1.S1_at--832--3151Chr03:36152173..36152197 (25 bp)
AATTCTGTGATTCAGCCTTGCTAAT
LOC_Os03g64080
Os.9258.1.S1_at--842--10711Chr03:36152156..36152180 (25 bp)
TTGCTAATCCAGTTCCATTTCTTGC
LOC_Os03g64080
Os.9258.1.S1_at--600--1031Chr03:36152063..36152087 (25 bp)
AGGTGCCTGCTGTAATTTTATTTTC
LOC_Os03g64080
Os.9258.1.S1_at--367--9211Chr03:36152031..36152055 (25 bp)
TCCACTTGGTGCTGATTGCGAGATT
LOC_Os03g64080
Os.9258.1.S1_at--1025--2951Chr03:36151989..36152013 (25 bp)
AAGGCCAACTCAATTTTGTCGCAAG
LOC_Os03g64080
Os.9258.1.S1_at--787--5171Chr03:36151969..36151993 (25 bp)
GCAAGAGCTGTTTTGGACTGCCATT
LOC_Os03g64080
Os.9258.1.S1_at--1151--3751Chr03:36151903..36151927 (25 bp)
CTCTTGTGCTCCTGTATTTTGCTAA
LOC_Os03g64080
Os.9258.1.S1_at--196--6831Chr03:36151813..36151837 (25 bp)
GTTTAGTTTATAGATCGGCCGCATT
LOC_Os03g64080
Os.9258.1.S1_at--566--491Chr03:36151800..36151824 (25 bp)
ATCGGCCGCATTCTGTATTGTGGAC
LOC_Os03g64080
Os.9258.1.S1_at--425--271Chr03:36151729..36151753 (25 bp)
ATATGTTCTTTTTACATTGCCCGCA
LOC_Os03g64080
Target Sequence 
GGAGCGTCAACGAATGCTTGCCATTCCAGGGCTTATTGCCCCAAGCGAATTACAAGATGAGATGGTTNGATTCATAATTC
TGTGATTCAGCCTTGCTAATCCAGTTCCATTTCTTGCTTTGGCCTCCNAACCNTCTGGAGCCCTCNANCANCCCATTGCC
CAAGTTCTCTTCCAGGGTGGTGAAAGAAGGTGCCTGCTGTAATTTTATTTTCGGTTACCTCCACTTGGTGCTGATTGCGA
GATTTCTGCTAGTCAATAGGAAAGGCCAACTCAATTTTGTCGCAAGAGCTGTTTTGGACTGCCATTGGTTTGCAGTATGA
GCTGTCAGGTTAATGTGATGACAGCAGCTCTTGTGCTCCTGTATTTTGCTAACATTGCTGCGTGTGCGGGGCCATCATAT
AGTATGATCACGGTACAACATTGTATCATGATTTTTAGTTTAGTTTATAGATCGGCCGCATTCTGTATTGTGGACAAGAT
TCAGGATAGAAACTTATATTCGTAGTGTACTATTTTGTGAAATATGTTCTTTTTACATTGCCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis