Browse Element(s) Details


Os.9298.1.S1_at

Description gb:AB125306.1
DB_XREF= gi:46917337
GEN=SAPK5
TID=Os.9298.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9298 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK5 mRNA for serinethreonine protein kinase SAPK5, complete cds.
PROD=serinethreonine protein kinase SAPK5
FL= gb:AK100269.1 gb:AB125306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5945011/11Serine/threonine-protein kinase SAPK5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9298.1.S1_at--315--1871Chr04:35126670..35126694 (25 bp)
ACGACCAACAACCAGCTGAGGAGGA
LOC_Os04g59450
Os.9298.1.S1_at--750--9351Chr04:35126751..35126775 (25 bp)
TCGACATGTCAAACCTCCAAATCTC
LOC_Os04g59450
Os.9298.1.S1_at--819--7411Chr04:35126809..35126833 (25 bp)
GTGTTGTGTTCTTCTGACCAGCATC
LOC_Os04g59450
Os.9298.1.S1_at--282--111Chr04:35126838..35126862 (25 bp)
ATTTCGTTTTGGATCAACCCCATCT
LOC_Os04g59450
Os.9298.1.S1_at--1032--2611Chr04:35126853..35126877 (25 bp)
AACCCCATCTGCACTGATTGCATGC
LOC_Os04g59450
Os.9298.1.S1_at--474--6592Chr04:35126868..35126892 (25 bp)
GATTGCATGCATTTTCTCATTCATA
LOC_Os04g59450
Os.9298.1.S1_at--1091--10031Chr04:35126899..35126923 (25 bp)
TAGATACTCGATCGATCAGTCCCCA
LOC_Os04g59450
Os.9298.1.S1_at--587--9391Chr04:35126910..35126934 (25 bp)
TCGATCAGTCCCCAAACAAACTTTG
LOC_Os04g59450
Os.9298.1.S1_at--836--7691Chr04:35126934..35126958 (25 bp)
GGGTACATTATTACATCACCTGTTT
LOC_Os04g59450
Os.9298.1.S1_at--758--7051Chr04:35127067..35127091 (25 bp)
GTAACTGCAGGGTATGTTCAGGCAC
LOC_Os04g59450
Os.9298.1.S1_at--106--6751Chr04:35127082..35127106 (25 bp)
GTTCAGGCACAATCACCATTTTACT
LOC_Os04g59450
Target Sequence 
ACGACCAACAACCAGCTGAGGAGGAGGACGAAGAAGACGACTACGACAGGACGGTGCGCGAGGTTCACGCCAGCGTCGAC
CTCGACATGTCAAACCTCCAAATCTCNTGATCCATCGTCGTCCATACTCCACTNCACTAGTGTTGTGTTCTTCTGACCAG
CATCGATCATTTCGTTTTGGATCAACCCCATCTGCACTGATTGCATGCATTTTCTCATTCATACATAGATAGATACTCGA
TCGATCAGTCCCCAAACAAACTTTGGGTACATTATTACATCACCTGTTTATATGAGTAAGGCAGCATTCATTGATGTAAA
TCTCCNCTGCTACGAGTAGCCTGTTATCATCTCTCTGCTTAATTGTGATCAGAATCAGAGACCACTAGATGATGGATGTA
ACTGCAGGGTATGTTCAGGCACAATCACCATTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis