Browse Element(s) Details


Os.9317.2.S1_at

Description gb:AK105075.1
DB_XREF= gi:32990284
TID=Os.9317.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F01, full insert sequence.
FL= gb:AK105075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0543011/1160S ribosomal protein L26-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed
LOC_Os12g05430Os.9317.2.S1_at11/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.45407.1.S1_s_at3/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.26422.1.S1_x_at1/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05440Os.51923.1.S1_at11/1112+2466931..2468702Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9317.2.S1_at--464--8731Chr12:2459761..2459785 (25 bp)
TGTCAGTTGTCACTCCTTCCTCTGT
LOC_Os12g05430
Os.9317.2.S1_at--547--3331Chr12:2459751..2459775 (25 bp)
CACTCCTTCCTCTGTTACAAGTTTA
LOC_Os12g05430
Os.9317.2.S1_at--619--1211Chr12:2459732..2459756 (25 bp)
AGTTTATGCTACTTGCTTGAAAGAA
LOC_Os12g05430
Os.9317.2.S1_at--372--1192Chr04:34954285..34954393 (24 bp)
AGTTTTGGAACTGATATTTGTCTTC
NONE
Os.9317.2.S1_at--811--6511Chr12:2459668..2459692 (25 bp)
GATATTTGTCTTCCATTTTGATAGA
LOC_Os12g05430
Os.9317.2.S1_at--966--3491Chr12:2459616..2459640 (25 bp)
CATGGTTTAGACGTTTACTGCTATA
LOC_Os12g05430
Os.9317.2.S1_at--739--1891Chr12:2459606..2459630 (25 bp)
ACGTTTACTGCTATATTTGTCTGTA
LOC_Os12g05430
Os.9317.2.S1_at--704--231Chr12:2459594..2459618 (25 bp)
ATATTTGTCTGTAATTGAAACTGCA
LOC_Os12g05430
Os.9317.2.S1_at--262--5551Chr12:2459578..2459602 (25 bp)
GAAACTGCAATTAGGCAGCTGCAAT
LOC_Os12g05430
Os.9317.2.S1_at--872--8251Chr12:2459565..2459589 (25 bp)
GGCAGCTGCAATGGAAACATGGAAT
LOC_Os12g05430
Os.9317.2.S1_at--1027--2391Chr12:2459551..2459575 (25 bp)
AAACATGGAATTCGTCAGGGAGATA
LOC_Os12g05430
Target Sequence 
TGTCAGTTGTCACTCCTTCCTCTGTTACAAGTTTATGCTACTTGCTTGAAAGAATTATTATCATAATCTATCTTTTCTAA
GAGTTTTGGAACTGATATTTGTCTTCCATTTTGATAGATTAAAAACTCATTATGTGTTAATTGATCATGGTTTAGACGTT
TACTGCTATATTTGTCTGTAATTGAAACTGCAATTAGGCAGCTGCAATGGAAACATGGAATTCGTCAGGGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9317.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis