Browse Element(s) Details


Os.9354.1.S1_at

Description gb:AK099629.1
DB_XREF= gi:32984838
TID=Os.9354.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057D07, full insert sequence.
FL= gb:AK120773.1 gb:AK099629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4482011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44830Os.51657.1.S1_at11/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44830OsAffx.13726.1.S1_x_at3/118+28022378..28026486zinc finger family protein, putative, expressed
LOC_Os08g44840Os.14153.2.S1_x_at11/118+28030293..28032462Transferase family protein, expressed
LOC_Os08g44850Os.8789.1.S1_at11/118+28037640..28039445C2 domain-containing protein, putative, expressed
LOC_Os08g44860Os.12607.1.S1_s_at11/118+28040442..28048874Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9354.1.S1_at--551--9571Chr08:28012732..28012756 (25 bp)
TCTTCTCGGCAGGTTTTGAGCCTGA
LOC_Os08g44820
Os.9354.1.S1_at--935--291Chr08:28012708..28012732 (25 bp)
ATACCCGTGTACACTTTGGCTGCAA
LOC_Os08g44820
Os.9354.1.S1_at--220--7491Chr08:28012607..28012631 (25 bp)
GTGGGCATGTGCATCTATGGCAAGT
LOC_Os08g44820
Os.9354.1.S1_at--103--10111Chr08:28012583..28012607 (25 bp)
TAGGCCTGCTGGTATTGGAGACGTT
LOC_Os08g44820
Os.9354.1.S1_at--501--931Chr08:28012523..28012547 (25 bp)
AGGCAAACTAGGGACCTCCTGCTGC
LOC_Os08g44820
Os.9354.1.S1_at--744--4711Chr08:28012500..28012524 (25 bp)
GCTGGCTTAATGTATTGCACTGCAT
LOC_Os08g44820
Os.9354.1.S1_at--365--1511Chr08:28012418..28012442 (25 bp)
AGCAGTACCGTTTTGCAGCTCGAGA
LOC_Os08g44820
Os.9354.1.S1_at--903--3151Chr08:28012373..28012397 (25 bp)
AATTCCTCAGGTGCTATTCGTAGTA
LOC_Os08g44820
Os.9354.1.S1_at--6--10551Chr08:28012305..28012329 (25 bp)
TTCATATTCATGTTTCTGGTTGGCA
LOC_Os08g44820
Os.9354.1.S1_at--1070--793Chr12:14175717..14175737 (21 bp)
ATGGGCGGTGCTAGTGCAAACTGCA
NONE
Os.9354.1.S1_at--120--5051Chr08:28012259..28012283 (25 bp)
GCAGAGTGCTGTAAATATTCCCCAA
LOC_Os08g44820
Target Sequence 
TCTTCTCGGCAGGTTTTGAGCCTGATACCCGTGTACACTTTGGCTGCAACACAATAACCGCAGTACTGCGTGGTGGCTTC
TGCCTCTTCTTCTTTTCAGCAATAATGCTCTTGGTGAGCTACGAGGTGGGCATGTGCATCTATGGCAAGTAGGCCTGCTG
GTATTGGAGACGTTAAGAACATGACGTTAGGTAATCCTATCTGTATTTGAGGCAAACTAGGGACCTCCTGCTGCTGGCTT
AATGTATTGCACTGCATGACATTACATGACCTCCATGTGTTGAACAAGGGCNGAGGCTGTTTAACTATAGCACTAGCAGT
ACCGTTTTGCAGCTCGAGAGAGCTAGTAGTGTATGTATGAATTCCTCAGGTGCTATTCGTAGTAGTAAGCGCGAATTGAT
TATTATCAGTTCATGATGGTGCTACTATTCATATTCATGTTTCTGGTTGGCATGGGCGGTGCTAGTGCAAACTGCAGAGT
GCTGTAAATATTCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis