Browse Element(s) Details


Os.9356.1.S1_at

Description gb:AK106121.1
DB_XREF= gi:32991330
TID=Os.9356.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1117_G01.11 (OJ1117_G01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E11, full insert sequence.
FL= gb:AK106121.1 gb:AK061495.1 gb:AK102396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4845011/11Auxin-responsive protein IAA8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein
LOC_Os01g48480NANA1+28114773..28117974hypothetical protein
LOC_Os01g48490OsAffx.15723.1.S1_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490Os.45161.1.A1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.22699.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48490OsAffx.7789.1.S1_x_at1/111+28118369..28127201retrotransposon protein, putative, unclassified
LOC_Os01g48500Os.6981.1.S1_at11/111+28128261..28129260expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9356.1.S1_at--111--8571Chr01:28105587..28105611 (25 bp)
TGGTTCAAAGGCTGATGCCCTCCAA
LOC_Os01g48450
Os.9356.1.S1_at--782--10251Chr01:28107036..28107060 (25 bp)
TTTGTTTACCACTATCTGCCGGAAA
LOC_Os01g48450
Os.9356.1.S1_at--412--2311Chr01:28107511..28107535 (25 bp)
GATAAGATTAACCTTCGTCCGGACG
LOC_Os01g48450
Os.9356.1.S1_at--91--931Chr01:28107540..28107564 (25 bp)
AGGCAACTGATCTAGCAGCTTTGGA
LOC_Os01g48450
Os.9356.1.S1_at--705--8791Chr01:28107567..28107591 (25 bp)
TGTTCATCGCAAGTATCCCAAATAT
LOC_Os01g48450
Os.9356.1.S1_at--182--7431Chr01:28107614..28107638 (25 bp)
GTGTTCATCAGACCTGTGCATTGTA
LOC_Os01g48450
Os.9356.1.S1_at--722--7071Chr01:28107644..28107668 (25 bp)
GTAATTTGTTCCTTTCAGATCGTGC
LOC_Os01g48450
Os.9356.1.S1_at--56--1291Chr01:28107660..28107684 (25 bp)
AGATCGTGCAATTGTGCGTTGCCCC
LOC_Os01g48450
Os.9356.1.S1_at--614--4191Chr01:28107682..28107706 (25 bp)
CCCCTCTTTTCTTTGCATTGAAGGT
LOC_Os01g48450
Os.9356.1.S1_at--807--7211Chr01:28107721..28107745 (25 bp)
GTCCGCTTATTTCTCTAAATCCTAG
LOC_Os01g48450
Os.9356.1.S1_at--774--2691Chr01:28107820..28107844 (25 bp)
AAGCTTGAACCTCTTGTGTGTTCTA
LOC_Os01g48450
Target Sequence 
TGGTTCAAAGGCTGATGCCCTCCAAGACCAAGAGTATGTCCTTACATATGAAGATAAGGATGCTGACTGGATGCTTGTTG
GTGATCTTCCTTGGGATTTGTTTACCACTATCTGCCGGAAATTGAAAATCATGAGAGGATCTGATGCTGCTGGAATAGCT
CCAAGATCAATAGAGCAGTCAGGGCAGAGCAGATAAGATTAACCTTCGTCCGGACGAGAAAGGCAACTGATCTAGCAGCT
TTGGAATTGTTCATCGCAAGTATCCCAAATATCTCAATGTCTGTGTAGTTTAATGTGTTCATCAGACCTGTGCATTGTAT
GTCTGTAATTTGTTCCTTTCAGATCGTGCAATTGTGCGTTGCCCCCTCTTTTCTTTGCATTGAAGGTCAAGTCGGGCTCT
TGTCCGCTTATTTCTCTAAATCCTAGTCAGTTCAAAAATTATCCATCATGACACATGAACTGATGGTGGATAATATGGCA
AGAAGCTTTTCTAATCATTCAAGCTTGAACCTCTTGTGTGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis