Browse Element(s) Details


Os.9366.1.S1_at

Description gb:AK098903.1
DB_XREF= gi:32984112
TID=Os.9366.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C22, full insert sequence.
FL= gb:AK061837.1 gb:AK098903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2673010/1120 kDa chaperonin, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26700Os.6087.1.S1_at10/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26700OsAffx.4491.1.S1_at1/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26710OsAffx.30044.1.S1_at11/119+16228908..16230064hypothetical protein
LOC_Os09g26720NANA9+16231928..16232890retrotransposon protein, putative, unclassified
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005516molecular_functioncalmodulin binding
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9366.1.S1_at--11--7711Chr09:16238158..16238182 (25 bp)
GGGTCTGACCATCTCATTTTGAAAG
LOC_Os09g26730
Os.9366.1.S1_at--910--1691Chr09:16238085..16238109 (25 bp)
AGCCACTGAATGACCGTGTTCTCAT
LOC_Os09g26730
Os.9366.1.S1_at--961--10851NONE
TTGGAACAGTGACAGCCGTAGGCCC
NONE
Os.9366.1.S1_at--68--4311Chr09:16235937..16235961 (25 bp)
CCTTGTCAATCACTCCTGGGAATAC
LOC_Os09g26730
Os.9366.1.S1_at--336--6911Chr09:16235845..16235869 (25 bp)
GTATCCGACGTAATGGCTGTTCTTT
LOC_Os09g26730
Os.9366.1.S1_at--358--871Chr09:16235833..16235857 (25 bp)
ATGGCTGTTCTTTCCTAAGCAGACA
LOC_Os09g26730
Os.9366.1.S1_at--199--2431Chr09:16235744..16235768 (25 bp)
AAAACTTTGTTGCACTGCTCTTGCT
LOC_Os09g26730
Os.9366.1.S1_at--554--5571Chr09:16235717..16235741 (25 bp)
GAAATGGTGTATCGCTGCTATTCCT
LOC_Os09g26730
Os.9366.1.S1_at--338--9071Chr09:16235702..16235726 (25 bp)
TGCTATTCCTACTTGATGTCACTGC
LOC_Os09g26730
Os.9366.1.S1_at--675--8111Chr09:16235657..16235681 (25 bp)
GGACGTGCTCTTTAGACTTTGGACA
LOC_Os09g26730
Os.9366.1.S1_at--258--3091Chr09:16235629..16235653 (25 bp)
AATAATGCTGTGCTGCTTTCCTTGG
LOC_Os09g26730
Target Sequence 
GGGTCTGACCATCTCATTTTGAAAGAAGATGACATCATTGGTATTCTCGACACAGATGATGTGAAAGATCTGAAGCCACT
GAATGACCGTGTTCTCATTAAGGTTGCAGAGGCTGAAGAGAAAACTGCAGGTGGTTTGCTATTGACACAAGCGACCAAAG
AAAAGCCTTCTATTGGAACAGTGACAGCCGTAGGCCCAGGACCATTGGTTGAGGATGGCAGCAGGAAACCCTTGTCAATC
ACTCCTGGGAATACCGTGATGTACTCCAANTACGCGGGAAGCGAGTTTAAGGGTGAAGATGGCGAATATATTGTTCTCAG
GGTATCCGACGTAATGGCTGTTCTTTCCTAAGCAGACAACGCTCTTGCGAAATAGGATTTTCTTTAAGAAAACATGTGAA
ATAGGAATTTTGATATTTAGTCAAAACTTTGTTGCACTGCTCTTGCTTGGAAATGGTGTATCGCTGCTATTCCTACTTGA
TGTCACTGCAAAATGCAGAGTTCAATACAGGACGTGCTCTTTAGACTTTGGACATATAATAATGCTGTGCTGCTTTCCTT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis