Browse Element(s) Details


Os.9440.1.S1_a_at

Description gb:AK064913.1
DB_XREF= gi:32974931
TID=Os.9440.1
CNT=77
FEA=FLmRNA
TIER=FL+Stack
STK=28
UG=Os.9440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full insert sequence.
FL= gb:AK064913.1 gb:AK060805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4582011/11Cell division protein ftsH homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45770OsAffx.30153.1.S1_at11/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45770OsAffx.30153.2.S1_x_at1/116+27698925..27702398BTB/POZ domain containing protein
LOC_Os06g45780OsAffx.5118.1.S1_x_at11/116+27703859..27704929hypothetical protein
LOC_Os06g45780Os.5212.2.S1_at6/116+27703859..27704929hypothetical protein
LOC_Os06g45780OsAffx.5136.1.S1_at3/116+27703859..27704929hypothetical protein
LOC_Os06g45790OsAffx.28123.1.S1_at11/116+27706148..27706591hypothetical protein
LOC_Os06g45800OsAffx.15942.1.S1_at11/116+27708822..27718177PAP/25A associated domain containing protein, expressed
LOC_Os06g45810Os.20602.2.S1_x_at11/116+27718971..27721151hAT family dimerisation domain containing protein
LOC_Os06g45820Os.9440.1.S1_a_at11/116+27723579..27727261Cell division protein ftsH homolog, putative, expressed
LOC_Os06g45830OsAffx.5119.1.S1_at11/116+27727573..27732665conserved oligomeric Golgi complex component, putative, expressed
LOC_Os06g45840Os.22374.1.S1_a_at10/116+27733727..27739380myb family transcription factor, putative, expressed
LOC_Os06g45850Os.16635.1.S1_at11/116+27742195..27746055OTU-like cysteine protease family protein, putative, expressed
LOC_Os06g45860Os.39896.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed
LOC_Os06g45860Os.14889.1.S1_at11/116+27748489..27755340molybdenum cofactor sulfurase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9440.1.S1_a_at--690--4371Chr06:27724369..27724393 (25 bp)
CCACAGGAGCTGCTGGTGACTTGCA
LOC_Os06g45820
Os.9440.1.S1_a_at--874--2071Chr06:27724050..27724074 (25 bp)
ACATTGGTCCGTGGTCGCTAATGGA
LOC_Os06g45820
Os.9440.1.S1_a_at--453--4831Chr06:27724018..27724042 (25 bp)
GCTCAGAGCGGCGATGTCATCATGA
LOC_Os06g45820
Os.9440.1.S1_a_at--174--3971Chr06:27723957..27723981 (25 bp)
CGGAGGACATCGATACCGCTGTGAA
LOC_Os06g45820
Os.9440.1.S1_a_at--1141--6291Chr06:27723922..27723946 (25 bp)
GATGAGGCCTACGAGATCGCTTTGA
LOC_Os06g45820
Os.9440.1.S1_a_at--826--1271Chr06:27723894..27723918 (25 bp)
AGATCAGGAGCAACCGGGAGGCCAT
LOC_Os06g45820
Os.9440.1.S1_a_at--107--1231Chr06:27723819..27723843 (25 bp)
AGTTCAGGGCGATTCTCTCCGAGTT
LOC_Os06g45820
Os.9440.1.S1_a_at--1043--1211Chr06:27723798..27723822 (25 bp)
AGTTCACGGAGATCCCTGTCGAGAA
LOC_Os06g45820
Os.9440.1.S1_a_at--291--9191Chr06:27723740..27723764 (25 bp)
TGCCTAAATCCCACTAGTTTTGTAG
LOC_Os06g45820
Os.9440.1.S1_a_at--624--3571Chr06:27723691..27723715 (25 bp)
CATATTTTCGATTCTTGGTGTACAC
LOC_Os06g45820
Os.9440.1.S1_a_at--1160--9831Chr06:27723671..27723695 (25 bp)
TACACTAACTTTACTTTGCCGGCCG
LOC_Os06g45820
Target Sequence 
CCACAGGAGCTGCTGGTGACTTGCAGCAAATTACTGGCCTAGCCAAGCAGATGGTGGTTACATTCGGTATGTCGGACATT
GGTCCGTGGTCGCTAATGGACTCAGGAGCTCAGAGCGGCGATGTCATCATGAGGATGATGGCAAGGAACTCCATGTCGGA
GAAGCTCGCGGAGGACATCGATACCGCTGTGAAGCGGTTGTCCGATGAGGCCTACGAGATCGCTTTGAGCCAGATCAGGA
GCAACCGGGAGGCCATGGACAAGATCGTGGAGGTGCTCCTTGAGAAGGAGACATTGAGTGGTGACGAGTTCAGGGCGATT
CTCTCCGAGTTCACGGAGATCCCTGTCGAGAACCGGGTTCCCCCAGCCACGCCGGCAGCTCTCCCTGCCTAAATCCCACT
AGTTTTGTAGGAATGGAACATGCTGTAAGATGTTCATATTTTCGATTCTTGGTGTACACTAACTTTACTTTGCCGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9440.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis