Browse Element(s) Details


Os.9461.1.S1_at

Description gb:AK120068.1
DB_XREF= gi:37989691
TID=Os.9461.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full insert sequence.
FL= gb:AK105074.1 gb:AK120068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3081011/11Peptidase family M1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30770Os.18695.1.S1_at11/118+18860450..18866114ABC transporter family protein, putative, expressed
LOC_Os08g30780OsAffx.29441.1.S1_at10/118+18868215..18874765ABC transporter family protein
LOC_Os08g30790Os.12619.1.S1_at11/118+18879035..18883158hypersensitive-induced response protein, putative, expressed
LOC_Os08g30800Os.24246.1.A1_at11/118+18884407..18885616expressed protein
LOC_Os08g30810Os.9461.1.S1_at11/118+18888975..18898823Peptidase family M1 containing protein, expressed
LOC_Os08g30820Os.33747.1.S1_at11/118+18898491..18900444pre-mrna cleavage factor, putative, expressed
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004179molecular_functionmembrane alanyl aminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9461.1.S1_at--529--1211Chr08:18898172..18898196 (25 bp)
AGTTCACTCATATCGGACTTCGTCA
LOC_Os08g30810
Os.9461.1.S1_at--1123--2251Chr08:18898196..18898302 (25 bp)
AAATCTACTGTTTCACGGTTCACCA
LOC_Os08g30810
Os.9461.1.S1_at--85--911Chr08:18898312..18898336 (25 bp)
AGGCTGCTGAAGTTTCCGAGTTCTT
LOC_Os08g30810
Os.9461.1.S1_at--417--2371Chr08:18898350..18898374 (25 bp)
AAACCATCGTTCGAGCGTGCACTGA
LOC_Os08g30810
Os.9461.1.S1_at--1063--1671Chr08:18898380..18898404 (25 bp)
AGCCTCGAGAGGGTCCGTATCAGCG
LOC_Os08g30810
Os.9461.1.S1_at--1027--1531Chr08:18898419..18898443 (25 bp)
AGCATCAGGAGCGAGCCTAACCTTG
LOC_Os08g30810
Os.9461.1.S1_at--1095--1491Chr08:18898468..18898492 (25 bp)
AGCACGACATGTAGCCTTCCTTTTG
LOC_Os08g30810
Os.9461.1.S1_at--389--4831Chr08:18898511..18898535 (25 bp)
GCTCATGGAGGATCGTACAACACAA
LOC_Os08g30810
Os.9461.1.S1_at--1044--8771Chr08:18898537..18898561 (25 bp)
TGTTCTTCGAAAGGTTGTGCCGGGT
LOC_Os08g30810
Os.9461.1.S1_at--1060--3971Chr08:18898557..18898581 (25 bp)
CGGGTGTGGCTGTTCTAACGATCAT
LOC_Os08g30810
Os.9461.1.S1_at--814--2331Chr08:18898631..18898655 (25 bp)
AAAGACATGTTTGGTCCTCGCAGCG
LOC_Os08g30810
Target Sequence 
AGTTCACTCATATCGGACTTCGTCAAATCTACTGTTTCACGGTTCACCACAGAGGAGAAGGCTGCTGAAGTTTCCGAGTT
CTTCGCCGGTAAAACCAAACCATCGTTCGAGCGTGCACTGAAGCAGAGCCTCGAGAGGGTCCGTATCAGCGCGAGATGGA
TCGAGAGCATCAGGAGCGAGCCTAACCTTGCTCAGACAGTGAACGAGCTGCTGCAGCACGACATGTAGCCTTCCTTTTGG
GCTAAAGCTATTTGTACGCTCATGGAGGATCGTACAACACAAATGTTCTTCGAAAGGTTGTGCCGGGTGTGGCTGTTCTA
ACGATCATATTTNAAAGTTTGTTTAGTTCTATCTNTATCTTTTGCTTGGGCAATCGAAAAGACATGTTTGGTCCTCGCAG
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis