Browse Element(s) Details


Os.9486.1.S1_at

Description gb:AK102441.1
DB_XREF= gi:32987650
TID=Os.9486.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093L19, full insert sequence.
FL= gb:AK102441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2812411/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28080NANA6+15944716..15947917Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28090Os.31312.2.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28090Os.31312.5.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28100NANA6+15956624..15962781retrotransposon protein, putative, unclassified
LOC_Os06g28110NANA6+15964218..15964427hypothetical protein
LOC_Os06g28124Os.9486.1.S1_at11/116+15967623..15972952HGA1, putative, expressed
LOC_Os06g28140NANA6+15976245..15980223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28150OsAffx.31802.2.S1_at5/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150OsAffx.31802.1.S1_at4/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150Os.50418.1.S1_at3/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28160OsAffx.4949.1.S1_at11/116+15995593..15999301hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9486.1.S1_at--49--9171Chr06:15968167..15968191 (25 bp)
TGCGCGACGTCGAGTACAGCATCGC
LOC_Os06g28124
Os.9486.1.S1_at--57--4511Chr06:15968141..15968165 (25 bp)
GCCGAGGAGAGCACGCTCTACGACA
LOC_Os06g28124
Os.9486.1.S1_at--824--5011Chr06:15968028..15968052 (25 bp)
GCAGGATATCAAGCTCAACGTCACC
LOC_Os06g28124
Os.9486.1.S1_at--105--4471Chr06:15967840..15967864 (25 bp)
GCCTCCGTTTGTTAGGTTGCACTAT
LOC_Os06g28124
Os.9486.1.S1_at--594--7911Chr06:15967826..15967850 (25 bp)
GGTTGCACTATCTGGATGTTTACAC
LOC_Os06g28124
Os.9486.1.S1_at--621--6892Chr02:1862148..1862516 (25 bp)
GTATACCATAGTACCATACCATATA
NONE
Os.9486.1.S1_at--579--2311Chr06:15967737..15967761 (25 bp)
AAAGGAACGCACATCACTATCTGGT
LOC_Os06g28124
Os.9486.1.S1_at--384--9471Chr06:15967718..15967742 (25 bp)
TCTGGTGCTGCGTGGTATATGTATG
LOC_Os06g28124
Os.9486.1.S1_at--319--2951Chr06:15967689..15967713 (25 bp)
AATGGCCCGAGGCACGACTCATGGC
LOC_Os06g28124
Os.9486.1.S1_at--1011--8451Chr06:15967655..15967679 (25 bp)
TGGCCCGGCCCAAATACAACAGTTG
LOC_Os06g28124
Os.9486.1.S1_at--99--3091Chr06:15967643..15967667 (25 bp)
AATACAACAGTTGGCCCCGTACCAG
LOC_Os06g28124
Target Sequence 
TGCGCGACGTCGAGTACAGCATCGCCGCCGAGGAGAGCACGCTCTACGACAAGTACGGCAAGGACCACCCGGCGATCAGG
GACCCGGAATCTATACACAAGCAAGGGTGGCAGTTCGGGATGAAGTACTACTGGATTGAGCAGGATATCAAGCTCAACGT
CACCAGATTTGCTCCCACGCTGCAGCAGGTGCTTCAAATGCTCAGGGGATAGACCTTACTCCGATCCGATCCTTCCTATA
CAGGCAGGCTTAGAGATACATCCGTAGAAACAAACAATTTCTTTATTTTTTGACGTTTCGACTTAGCATGCCGTGGCGAA
TTCGCGCGCCTCCGTTTGTTAGGTTGCACTATCTGGATGTTTACACAAATANATAGTAGAGTGAACAAAGTATACCATAG
TACCATACCATATACTCTATGAAGGAAACTAAAGGAACGCACATCACTATCTGGTGCTGCGTGGTATATGTATGGCCAAA
TGGCCCGAGGCACGACTCATGGCACGGGGTTTTGGCCCGGCCCAAATACAACAGTTGGCCCCGTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis