Browse Element(s) Details


Os.9496.1.S1_at

Description gb:AK064038.1
DB_XREF= gi:32974056
TID=Os.9496.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamoyl-CoA reductase (OSJNBa0027L23.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C10, full insert sequence.
FL= gb:AK099381.1 gb:AK064038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4262011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein
LOC_Os10g42640OsAffx.18609.1.S1_at11/1110+22661332..22664456expressed protein
LOC_Os10g42650Os.7820.1.S1_x_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42650Os.54601.1.S1_s_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9496.1.S1_at--612--2891Chr10:22655860..22655884 (25 bp)
AAGGGTGCACCCGACATGTACGACC
LOC_Os10g42620
Os.9496.1.S1_at--476--8111Chr10:22655962..22655986 (25 bp)
GGACGCTACCTCTGCTTCAACAACG
LOC_Os10g42620
Os.9496.1.S1_at--991--9151Chr10:22656060..22656197 (25 bp)
TGCGCCGCCGAGTGATGAGCTCAAG
LOC_Os10g42620
Os.9496.1.S1_at--990--8911Chr10:22656188..22656212 (25 bp)
TGAGCTCAAGGTGATCCCACAGAGG
LOC_Os10g42620
Os.9496.1.S1_at--163--5411Chr10:22656224..22656248 (25 bp)
GAAGCTCAACAAACTCATGCTGGAC
LOC_Os10g42620
Os.9496.1.S1_at--595--8531Chr10:22656244..22656268 (25 bp)
TGGACTTCACCAGTGGCGTATACGG
LOC_Os10g42620
Os.9496.1.S1_at--300--6531Chr10:22656294..22656318 (25 bp)
GATTTGCCTTCCTTTATTTTATATA
LOC_Os10g42620
Os.9496.1.S1_at--363--251Chr10:22656316..22656340 (25 bp)
ATATCACACGTGCAACTAGACATGT
LOC_Os10g42620
Os.9496.1.S1_at--200--1411Chr10:22656333..22656357 (25 bp)
AGACATGTACTACTCCTCTTGTATC
LOC_Os10g42620
Os.9496.1.S1_at--182--10211Chr10:22656364..22656388 (25 bp)
TATTTCTTTTATTCTTTCTCCTCTA
LOC_Os10g42620
Os.9496.1.S1_at--1015--1591Chr10:22656437..22656461 (25 bp)
AGCTGCCACATGTATTCCATTCTTA
LOC_Os10g42620
Target Sequence 
AAGGGTGCACCCGACATGTACGACCACGGCGTCCTCGTCACCGTCGACGTCGACTTCCTCGCCGACGCCCACATCGCCGC
CTACGAGTGCCCCACCGCCTACGGACGCTACCTCTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCG
CCCAGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCAAGGTGATCCCACAGAGG
ATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCAGTGGCGTATACGGGGACATAAATTAAATTAAACTAGG
GGATTTGCCTTCCTTTATTTTATATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTT
TATTCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCCAAGCTGCCACATGTATT
CCATTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis