Browse Element(s) Details


Os.9597.1.S1_at

Description gb:AY062179.1
DB_XREF= gi:21304224
TID=Os.9597.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9597 (NCBI UniGene Cluster)
DEF=Oryza sativa aintegumenta-like protein mRNA, complete cds.
PROD=aintegumenta-like protein
FL= gb:AK111891.1 gb:AY062179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5597011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os04g55970Os.9597.1.S1_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55970Os.50864.1.S1_x_at11/114+33122912..33127493AP2 domain containing protein, expressed
LOC_Os04g55980OsAffx.14430.1.S1_s_at11/114+33128815..33129441expressed protein
LOC_Os04g55980Os.51427.1.S1_at11/114+33128815..33129441expressed protein
LOC_Os04g55990OsAffx.14431.1.S1_x_at11/114+33130600..33131006hypothetical protein
LOC_Os04g56000OsAffx.14430.1.S1_s_at11/114+33133083..33133373hypothetical protein
LOC_Os04g56010OsAffx.14430.1.S1_s_at11/114+33141552..33141881hypothetical protein
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9597.1.S1_at--367--8031Chr04:33126914..33126938 (25 bp)
GGAGGTGGCACTTTGCAGGCAAAAA
LOC_Os04g55970
Os.9597.1.S1_at--501--7991Chr04:33126939..33126963 (25 bp)
GGATGAAGAGCCTGATCCCTGATCA
LOC_Os04g55970
Os.9597.1.S1_at--338--5731Chr04:33126981..33127005 (25 bp)
GACTGACATAGTTCATTCTCACACA
LOC_Os04g55970
Os.9597.1.S1_at--884--4891Chr04:33127316..33127340 (25 bp)
GCTTAGCCCATGTACAATGGAAGCA
LOC_Os04g55970
Os.9597.1.S1_at--653--5392Chr04:33131576..33131600 (25 bp)
GAAGCAGGGACGTCTCTTTGTAGCT
NONE
Os.9597.1.S1_at--349--3692Chr04:33131591..33131615 (25 bp)
CTTTGTAGCTTTTGCTTCTTTTCTT
NONE
Os.9597.1.S1_at--915--3652Chr04:33127367..33127391 (25 bp)
CTTTTCTTTTGTTAGATCGCCTTTG
LOC_Os04g55970
Os.9597.1.S1_at--997--6771Chr04:33127377..33127401 (25 bp)
GTTAGATCGCCTTTGGTAGCGGCCC
LOC_Os04g55970
Os.9597.1.S1_at--268--3913Chr04:33127396..33127420 (25 bp)
CGGCCCCTGTTTACTCAAGAAGTTG
LOC_Os04g55970
Os.9597.1.S1_at--548--3771Chr04:33127421..33127445 (25 bp)
CTCTCCCTCCACAAGTATACAATGA
LOC_Os04g55970
Os.9597.1.S1_at--123--671Chr04:33127442..33127466 (25 bp)
ATGAAATGTACTGCAGGAACTAAAC
LOC_Os04g55970
Target Sequence 
GGAGGTGGCACTTTGCAGGCAAAAAGGATGAAGAGCCTGATCCCTGATCAGAGGTGATGAGGATCAAGACTGACATAGTT
CATTCTCACACAACAACAACAACAACAAACATAAAGAGCAGGGGAAAAGAGAGGTAATGTAGTAGTAGTGGTATGATGAT
AAAGTATGATGCAAACATAGTANGAAGCAGTATGCAGGAGAGAGATACTGACAGGTCAGAGACAGGAGGAGAAGACTCTG
CTAACAAAACGATGCAGCGCAAGCATATTGTTTTATTTTACTGCCCTTTTACCCTTTTGTAGCTTTGTTTTCTTGTGCTT
TTGTCATCGCTGAGCTTTGTTTGCCGCTCAGCTTCTTTTGAGCTTTTCTTTCTACTGACATGATTCTGCAAGTGCCATGA
TAGCTTAGCCCATGTACAATGGAAGCAGGGACGTCTCTTTGTAGCTTTTGCTTCTTTTCTTTTGTTAGATCGCCTTTGGT
AGCGGCCCCTGTTTACTCAAGAAGTTGCTCTCCCTCCACAAGTATACAATGAAATGTACTGCAGGAACTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis